Training in progress, epoch 1
Browse files- .gitignore +1 -0
- config.json +44 -0
- pytorch_model.bin +3 -0
- runs/May05_16-04-01_8c8668d02d63/1683302646.536679/events.out.tfevents.1683302646.8c8668d02d63.1160.1 +3 -0
- runs/May05_16-04-01_8c8668d02d63/events.out.tfevents.1683302646.8c8668d02d63.1160.0 +3 -0
- runs/May05_16-06-33_8c8668d02d63/1683302796.0668526/events.out.tfevents.1683302796.8c8668d02d63.1160.3 +3 -0
- runs/May05_16-06-33_8c8668d02d63/events.out.tfevents.1683302796.8c8668d02d63.1160.2 +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +0 -0
- tokenizer_config.json +15 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
.gitignore
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
checkpoint-*/
|
config.json
ADDED
@@ -0,0 +1,44 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"_name_or_path": "michiyasunaga/BioLinkBERT-base",
|
3 |
+
"architectures": [
|
4 |
+
"BertForTokenClassification"
|
5 |
+
],
|
6 |
+
"attention_probs_dropout_prob": 0.1,
|
7 |
+
"classifier_dropout": null,
|
8 |
+
"gradient_checkpointing": false,
|
9 |
+
"hidden_act": "gelu",
|
10 |
+
"hidden_dropout_prob": 0.1,
|
11 |
+
"hidden_size": 768,
|
12 |
+
"id2label": {
|
13 |
+
"0": "O",
|
14 |
+
"1": "B-participant",
|
15 |
+
"2": "I-participant",
|
16 |
+
"3": "B-intervention",
|
17 |
+
"4": "I-intervention",
|
18 |
+
"5": "B-outcome",
|
19 |
+
"6": "I-outcome"
|
20 |
+
},
|
21 |
+
"initializer_range": 0.02,
|
22 |
+
"intermediate_size": 3072,
|
23 |
+
"label2id": {
|
24 |
+
"B-intervention": 3,
|
25 |
+
"B-outcome": 5,
|
26 |
+
"B-participant": 1,
|
27 |
+
"I-intervention": 4,
|
28 |
+
"I-outcome": 6,
|
29 |
+
"I-participant": 2,
|
30 |
+
"O": 0
|
31 |
+
},
|
32 |
+
"layer_norm_eps": 1e-12,
|
33 |
+
"max_position_embeddings": 512,
|
34 |
+
"model_type": "bert",
|
35 |
+
"num_attention_heads": 12,
|
36 |
+
"num_hidden_layers": 12,
|
37 |
+
"pad_token_id": 0,
|
38 |
+
"position_embedding_type": "absolute",
|
39 |
+
"torch_dtype": "float32",
|
40 |
+
"transformers_version": "4.28.1",
|
41 |
+
"type_vocab_size": 2,
|
42 |
+
"use_cache": true,
|
43 |
+
"vocab_size": 28895
|
44 |
+
}
|
pytorch_model.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:9a8e8d25274b514fe8245612531f469a95ef7ce7c956962bfdb326893f9d2bd9
|
3 |
+
size 430662125
|
runs/May05_16-04-01_8c8668d02d63/1683302646.536679/events.out.tfevents.1683302646.8c8668d02d63.1160.1
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:daa44068070ec0011b26000609a28e6ee592a61f5487439577b6c65557d1a5bd
|
3 |
+
size 5873
|
runs/May05_16-04-01_8c8668d02d63/events.out.tfevents.1683302646.8c8668d02d63.1160.0
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:a32f32594e10ccc592b68e562bf27b184f9ce6dc686c4ccf586058bc7be410cc
|
3 |
+
size 4347
|
runs/May05_16-06-33_8c8668d02d63/1683302796.0668526/events.out.tfevents.1683302796.8c8668d02d63.1160.3
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:3d8ba132564eec5c2b4c161751d92885031af5af857e95595d8bba8a9faede99
|
3 |
+
size 5873
|
runs/May05_16-06-33_8c8668d02d63/events.out.tfevents.1683302796.8c8668d02d63.1160.2
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:30d066d10130a88e7dd5d1e3108c12175cc5ae96c86386eb67e4303c8f56973a
|
3 |
+
size 4810
|
special_tokens_map.json
ADDED
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"cls_token": "[CLS]",
|
3 |
+
"mask_token": "[MASK]",
|
4 |
+
"pad_token": "[PAD]",
|
5 |
+
"sep_token": "[SEP]",
|
6 |
+
"unk_token": "[UNK]"
|
7 |
+
}
|
tokenizer.json
ADDED
The diff for this file is too large to render.
See raw diff
|
|
tokenizer_config.json
ADDED
@@ -0,0 +1,15 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"clean_up_tokenization_spaces": true,
|
3 |
+
"cls_token": "[CLS]",
|
4 |
+
"do_basic_tokenize": true,
|
5 |
+
"do_lower_case": true,
|
6 |
+
"mask_token": "[MASK]",
|
7 |
+
"model_max_length": 1000000000000000019884624838656,
|
8 |
+
"never_split": null,
|
9 |
+
"pad_token": "[PAD]",
|
10 |
+
"sep_token": "[SEP]",
|
11 |
+
"strip_accents": null,
|
12 |
+
"tokenize_chinese_chars": true,
|
13 |
+
"tokenizer_class": "BertTokenizer",
|
14 |
+
"unk_token": "[UNK]"
|
15 |
+
}
|
training_args.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b33841096e05026901c828b6e9d33aae50eb136947af5972c68e86a75435e0bf
|
3 |
+
size 3579
|
vocab.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|