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{
"cells": [
{
"cell_type": "markdown",
"id": "3f9ce240-fd1a-4550-83c7-8cf9658b1d3a",
"metadata": {},
"source": [
"# Dataloading (1B+ Training Pairs)\n",
"\n",
"## This notebook collects and uploads all 50 relevant sentence embedding datasets to S3 as .json.gz files where each line contains one training record"
]
},
{
"cell_type": "code",
"execution_count": 62,
"id": "d7af8d0e-b3ed-4007-abdd-5952d775e119",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"import os\n",
"import pandas as pd\n",
"\n",
"os.chdir('/home/ec2-user/SageMaker')"
]
},
{
"cell_type": "code",
"execution_count": 63,
"id": "686699fb-d2c9-4653-afca-580aef343451",
"metadata": {
"collapsed": true,
"jupyter": {
"outputs_hidden": true
},
"tags": []
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
" : update-motd, versionlock\n",
"Cleaning repos: amzn2-core amzn2extra-docker amzn2extra-epel\n",
" : amzn2extra-kernel-5.10 amzn2extra-python3.8 centos-extras\n",
" : copr:copr.fedorainfracloud.org:vbatts:shadow-utils-newxidmap\n",
" : docker-ce-stable libnvidia-container neuron\n",
"21 metadata files removed\n",
"15 sqlite files removed\n",
"0 metadata files removed\n",
"Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
" : update-motd, versionlock\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"https://download.docker.com/linux/centos/2/x86_64/stable/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found\n",
"Trying other mirror.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"62 packages excluded due to repository priority protections\n",
"Resolving Dependencies\n",
"--> Running transaction check\n",
"---> Package epel-release.noarch 0:7-11 will be installed\n",
"--> Finished Dependency Resolution\n",
"\n",
"Dependencies Resolved\n",
"\n",
"================================================================================\n",
" Package Arch Version Repository Size\n",
"================================================================================\n",
"Installing:\n",
" epel-release noarch 7-11 amzn2extra-epel 15 k\n",
"\n",
"Transaction Summary\n",
"================================================================================\n",
"Install 1 Package\n",
"\n",
"Total download size: 15 k\n",
"Installed size: 24 k\n",
"Downloading packages:\n",
"Running transaction check\n",
"Running transaction test\n",
"Transaction test succeeded\n",
"Running transaction\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"Warning: RPMDB altered outside of yum.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
" Installing : epel-release-7-11.noarch 1/1 \n",
" Verifying : epel-release-7-11.noarch 1/1 \n",
"\n",
"Installed:\n",
" epel-release.noarch 0:7-11 \n",
"\n",
"Complete!\n",
"Installing epel-release\n",
" 0 ansible2 available \\\n",
" [ =2.4.2 =2.4.6 =2.8 =stable ]\n",
" 2 httpd_modules available [ =1.0 =stable ]\n",
" 3 memcached1.5 available \\\n",
" [ =1.5.1 =1.5.16 =1.5.17 ]\n",
" 6 postgresql10 available [ =10 =stable ]\n",
" 9 R3.4 available [ =3.4.3 =stable ]\n",
" 10 rust1 available \\\n",
" [ =1.22.1 =1.26.0 =1.26.1 =1.27.2 =1.31.0 =1.38.0\n",
" =stable ]\n",
" 18 libreoffice available \\\n",
" [ =5.0.6.2_15 =5.3.6.1 =stable ]\n",
" 19 gimp available [ =2.8.22 ]\n",
" 20 docker=latest enabled \\\n",
" [ =17.12.1 =18.03.1 =18.06.1 =18.09.9 =stable ]\n",
" 21 mate-desktop1.x available \\\n",
" [ =1.19.0 =1.20.0 =stable ]\n",
" 22 GraphicsMagick1.3 available \\\n",
" [ =1.3.29 =1.3.32 =1.3.34 =stable ]\n",
" 23 tomcat8.5 available \\\n",
" [ =8.5.31 =8.5.32 =8.5.38 =8.5.40 =8.5.42 =8.5.50\n",
" =stable ]\n",
" 24 epel=latest enabled [ =7.11 =stable ]\n",
" 25 testing available [ =1.0 =stable ]\n",
" 26 ecs available [ =stable ]\n",
" 27 corretto8 available \\\n",
" [ =1.8.0_192 =1.8.0_202 =1.8.0_212 =1.8.0_222 =1.8.0_232\n",
" =1.8.0_242 =stable ]\n",
" 29 golang1.11 available \\\n",
" [ =1.11.3 =1.11.11 =1.11.13 =stable ]\n",
" 30 squid4 available [ =4 =stable ]\n",
" 32 lustre2.10 available \\\n",
" [ =2.10.5 =2.10.8 =stable ]\n",
" 33 java-openjdk11 available [ =11 =stable ]\n",
" 34 lynis available [ =stable ]\n",
" 36 BCC available [ =0.x =stable ]\n",
" 37 mono available [ =5.x =stable ]\n",
" 38 nginx1 available [ =stable ]\n",
" 40 mock available [ =stable ]\n",
" 41 postgresql11 available [ =11 =stable ]\n",
" 43 livepatch available [ =stable ]\n",
" 44 python3.8=latest enabled [ =stable ]\n",
" 45 haproxy2 available [ =stable ]\n",
" 46 collectd available [ =stable ]\n",
" 47 aws-nitro-enclaves-cli available [ =stable ]\n",
" 48 R4 available [ =stable ]\n",
" _ kernel-5.4 available [ =stable ]\n",
" 50 selinux-ng available [ =stable ]\n",
" 51 php8.0 available [ =stable ]\n",
" 52 tomcat9 available [ =stable ]\n",
" 53 unbound1.13 available [ =stable ]\n",
" 54 mariadb10.5 available [ =stable ]\n",
" 55 kernel-5.10=latest enabled [ =stable ]\n",
" 56 redis6 available [ =stable ]\n",
" 57 ruby3.0 available [ =stable ]\n",
" 58 postgresql12 available [ =stable ]\n",
" 59 postgresql13 available [ =stable ]\n",
" 60 mock2 available [ =stable ]\n",
" 61 dnsmasq2.85 available [ =stable ]\n",
" 62 kernel-5.15 available [ =stable ]\n",
" 63 postgresql14 available [ =stable ]\n",
" 64 firefox available [ =stable ]\n",
" 65 lustre available [ =stable ]\n",
" 66 php8.1 available [ =stable ]\n",
" 67 awscli1 available [ =stable ]\n",
" 68 php8.2 available [ =stable ]\n",
" 69 dnsmasq available [ =stable ]\n",
" 70 unbound1.17 available [ =stable ]\n",
" 71 golang1.19 available [ =stable ]\n",
" 72 collectd-python3 available [ =stable ]\n",
"Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
" : update-motd, versionlock\n",
"================================== repo: epel ==================================\n",
"[epel]\n",
"async = True\n",
"bandwidth = 0\n",
"base_persistdir = /var/lib/yum/repos/x86_64/2\n",
"baseurl = \n",
"cache = 0\n",
"cachedir = /var/cache/yum/x86_64/2/epel\n",
"check_config_file_age = True\n",
"compare_providers_priority = 80\n",
"cost = 1000\n",
"deltarpm_metadata_percentage = 100\n",
"deltarpm_percentage = \n",
"enabled = True\n",
"enablegroups = True\n",
"exclude = \n",
"failovermethod = priority\n",
"ftp_disable_epsv = False\n",
"gpgcadir = /var/lib/yum/repos/x86_64/2/epel/gpgcadir\n",
"gpgcakey = \n",
"gpgcheck = True\n",
"gpgdir = /var/lib/yum/repos/x86_64/2/epel/gpgdir\n",
"gpgkey = file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7\n",
"hdrdir = /var/cache/yum/x86_64/2/epel/headers\n",
"http_caching = all\n",
"includepkgs = \n",
"ip_resolve = \n",
"keepalive = True\n",
"keepcache = False\n",
"mddownloadpolicy = sqlite\n",
"mdpolicy = group:small\n",
"mediaid = \n",
"metadata_expire = 21600\n",
"metadata_expire_filter = read-only:present\n",
"metalink = https://mirrors.fedoraproject.org/metalink?repo=epel-7&arch=x86_64\n",
"minrate = 0\n",
"mirrorlist = \n",
"mirrorlist_expire = 86400\n",
"name = Extra Packages for Enterprise Linux 7 - x86_64\n",
"old_base_cache_dir = \n",
"password = \n",
"persistdir = /var/lib/yum/repos/x86_64/2/epel\n",
"pkgdir = /var/cache/yum/x86_64/2/epel/packages\n",
"priority = 99\n",
"proxy = False\n",
"proxy_dict = \n",
"proxy_password = \n",
"proxy_username = \n",
"repo_gpgcheck = False\n",
"report_instanceid = False\n",
"retries = 7\n",
"skip_if_unavailable = False\n",
"ssl_check_cert_permissions = True\n",
"sslcacert = \n",
"sslclientcert = \n",
"sslclientkey = \n",
"sslverify = True\n",
"throttle = 0\n",
"timeout = 5.0\n",
"ui_id = epel/x86_64\n",
"ui_repoid_vars = releasever,\n",
" basearch\n",
"username = \n",
"\n",
"Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
" : update-motd, versionlock\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"https://download.docker.com/linux/centos/2/x86_64/stable/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found\n",
"Trying other mirror.\n",
"http://mirror.es.its.nyu.edu/epel/7/x86_64/repodata/repomd.xml: [Errno 12] Timeout on http://mirror.es.its.nyu.edu/epel/7/x86_64/repodata/repomd.xml: (28, 'Failed to connect to mirror.es.its.nyu.edu port 80 after 5001 ms: Timeout was reached')\n",
"Trying other mirror.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"286 packages excluded due to repository priority protections\n",
"Resolving Dependencies\n",
"--> Running transaction check\n",
"---> Package git-lfs.x86_64 0:2.10.0-2.el7 will be installed\n",
"--> Finished Dependency Resolution\n",
"\n",
"Dependencies Resolved\n",
"\n",
"================================================================================\n",
" Package Arch Version Repository Size\n",
"================================================================================\n",
"Installing:\n",
" git-lfs x86_64 2.10.0-2.el7 epel 3.7 M\n",
"\n",
"Transaction Summary\n",
"================================================================================\n",
"Install 1 Package\n",
"\n",
"Total download size: 3.7 M\n",
"Installed size: 13 M\n",
"Downloading packages:\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"warning: /var/cache/yum/x86_64/2/epel/packages/git-lfs-2.10.0-2.el7.x86_64.rpm: Header V4 RSA/SHA256 Signature, key ID 352c64e5: NOKEY\n",
"Importing GPG key 0x352C64E5:\n",
" Userid : \"Fedora EPEL (7) <epel@fedoraproject.org>\"\n",
" Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5\n",
" Package : epel-release-7-11.noarch (@amzn2extra-epel)\n",
" From : /etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"Public key for git-lfs-2.10.0-2.el7.x86_64.rpm is not installed\n",
"Retrieving key from file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7\n",
"Running transaction check\n",
"Running transaction test\n",
"Transaction test succeeded\n",
"Running transaction\n",
" Installing : git-lfs-2.10.0-2.el7.x86_64 1/1 \n",
" Verifying : git-lfs-2.10.0-2.el7.x86_64 1/1 \n",
"\n",
"Installed:\n",
" git-lfs.x86_64 0:2.10.0-2.el7 \n",
"\n",
"Complete!\n",
"Git LFS initialized.\n"
]
},
{
"data": {
"text/plain": [
"0"
]
},
"execution_count": 63,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# install git-lfs\n",
"os.system('sudo amazon-linux-extras install epel -y')\n",
"os.system('sudo yum-config-manager --enable epel')\n",
"os.system('sudo yum install git-lfs -y')\n",
"os.system('git lfs install')"
]
},
{
"cell_type": "code",
"execution_count": 3,
"id": "6595a6c5-9fae-4bd4-b096-53475ec98294",
"metadata": {
"tags": []
},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"Cloning into 'stackexchange_title_body_jsonl'...\n",
"Cloning into 'stackexchange_titlebody_best_voted_answer_jsonl'...\n",
"Cloning into 'stackexchange_title_best_voted_answer_jsonl'...\n",
"Cloning into 'stackexchange_titlebody_best_and_down_voted_answer_jsonl'...\n",
"Cloning into 'reddit-title-body'...\n",
"Cloning into '1B_sentence_embeddings'...\n"
]
},
{
"data": {
"text/plain": [
"0"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# clone relevant datasets' github repositories\n",
"stacks = ['stackexchange_title_body_jsonl', #25.3M \n",
" 'stackexchange_titlebody_best_voted_answer_jsonl', #4.75M\n",
" 'stackexchange_title_best_voted_answer_jsonl', #4.75M\n",
" 'stackexchange_titlebody_best_and_down_voted_answer_jsonl'] #210K\n",
"\n",
"os.environ['GIT_LFS_SKIP_SMUDGE'] = \"1\"\n",
"\n",
"# clone stackexchange repos\n",
"for stack in stacks:\n",
" os.system(f'git clone https://huggingface.co/datasets/flax-sentence-embeddings/{stack}')\n",
"# clone reddit repo\n",
"os.system('git clone https://huggingface.co/datasets/sentence-transformers/reddit-title-body')\n",
"# clone 1B+ sentence embeddings repo (this one is just for reference)\n",
"os.system('git clone https://github.com/AntoineSimoulin/1B_sentence_embeddings')"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "56438029-0f26-491c-b405-f92fb9caeff7",
"metadata": {
"collapsed": true,
"jupyter": {
"outputs_hidden": true
},
"tags": []
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Downloading 4 StackExchange GitHub datasets into s3://lodestone-rnd/data/\n",
"upload: ./networkengineering.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/networkengineering.stackexchange.com.json.gz\n",
"upload: ./emacs.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/emacs.stackexchange.com.json.gz\n",
"upload: ./christianity.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/christianity.stackexchange.com.json.gz\n",
"upload: ./bitcoin.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/bitcoin.stackexchange.com.json.gz\n",
"upload: ./academia.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/academia.stackexchange.com.json.gz\n",
"upload: ./music.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/music.stackexchange.com.json.gz\n",
"upload: ./biology.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/biology.stackexchange.com.json.gz\n",
"upload: ./history.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/history.stackexchange.com.json.gz\n",
"upload: ./skeptics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/skeptics.stackexchange.com.json.gz\n",
"upload: ./anime.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/anime.stackexchange.com.json.gz\n",
"upload: ./quant.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/quant.stackexchange.com.json.gz\n",
"upload: ./boardgames.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/boardgames.stackexchange.com.json.gz\n",
"upload: ./judaism.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/judaism.stackexchange.com.json.gz\n",
"upload: ./travel.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/travel.stackexchange.com.json.gz\n",
"upload: ./gaming.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gaming.stackexchange.com.json.gz\n",
"upload: ./webapps.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/webapps.stackexchange.com.json.gz\n",
"upload: ./stats.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/stats.stackexchange.com.json.gz\n",
"upload: ./law.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/law.stackexchange.com.json.gz\n",
"upload: ./scifi.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/scifi.stackexchange.com.json.gz\n",
"upload: ./bicycles.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/bicycles.stackexchange.com.json.gz\n",
"upload: ./datascience.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/datascience.stackexchange.com.json.gz\n",
"upload: ./softwareengineering.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/softwareengineering.stackexchange.com.json.gz\n",
"upload: ./islam.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/islam.stackexchange.com.json.gz\n",
"upload: ./craftcms.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/craftcms.stackexchange.com.json.gz\n",
"upload: ./diy.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/diy.stackexchange.com.json.gz\n",
"upload: ./arduino.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/arduino.stackexchange.com.json.gz\n",
"upload: ./raspberrypi.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/raspberrypi.stackexchange.com.json.gz\n",
"upload: ./wordpress.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/wordpress.stackexchange.com.json.gz\n",
"upload: ./dba.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/dba.stackexchange.com.json.gz\n",
"upload: ./apple.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/apple.stackexchange.com.json.gz\n",
"upload: ./hinduism.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/hinduism.stackexchange.com.json.gz\n",
"upload: ./mechanics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/mechanics.stackexchange.com.json.gz\n",
"upload: ./gamedev.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gamedev.stackexchange.com.json.gz\n",
"upload: ./writers.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/writers.stackexchange.com.json.gz\n",
"upload: ./mathematica.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/mathematica.stackexchange.com.json.gz\n",
"upload: ./unix.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/unix.stackexchange.com.json.gz\n",
"upload: ./magento.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/magento.stackexchange.com.json.gz\n",
"upload: ./ethereum.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/ethereum.stackexchange.com.json.gz\n",
"upload: ./electronics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/electronics.stackexchange.com.json.gz\n",
"upload: ./cs.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/cs.stackexchange.com.json.gz\n",
"upload: ./blender.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/blender.stackexchange.com.json.gz\n",
"upload: ./drupal.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/drupal.stackexchange.com.json.gz\n",
"upload: ./small_stackexchanges.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/small_stackexchanges.json.gz\n",
"upload: ./photo.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/photo.stackexchange.com.json.gz\n",
"upload: ./engineering.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/engineering.stackexchange.com.json.gz\n",
"upload: ./ux.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/ux.stackexchange.com.json.gz\n",
"upload: ./german.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/german.stackexchange.com.json.gz\n",
"upload: ./japanese.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/japanese.stackexchange.com.json.gz\n",
"upload: ./civicrm.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/civicrm.stackexchange.com.json.gz\n",
"upload: ./sharepoint.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/sharepoint.stackexchange.com.json.gz\n",
"upload: ./mathoverflow.net.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/mathoverflow.net.json.gz\n",
"upload: ./meta.stackoverflow.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/meta.stackoverflow.com.json.gz\n",
"upload: ./rpg.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/rpg.stackexchange.com.json.gz\n",
"upload: ./crypto.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/crypto.stackexchange.com.json.gz\n",
"upload: ./vi.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/vi.stackexchange.com.json.gz\n",
"upload: ./graphicdesign.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/graphicdesign.stackexchange.com.json.gz\n",
"upload: ./cooking.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/cooking.stackexchange.com.json.gz\n",
"upload: ./math.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/math.stackexchange.com.json.gz\n",
"upload: ./expressionengine.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/expressionengine.stackexchange.com.json.gz\n",
"upload: ./movies.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/movies.stackexchange.com.json.gz\n",
"upload: ./salesforce.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/salesforce.stackexchange.com.json.gz\n",
"upload: ./physics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/physics.stackexchange.com.json.gz\n",
"upload: ./aviation.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/aviation.stackexchange.com.json.gz\n",
"upload: ./gardening.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gardening.stackexchange.com.json.gz\n",
"upload: ./english.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/english.stackexchange.com.json.gz\n",
"upload: ./askubuntu.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/askubuntu.com.json.gz\n",
"upload: ./french.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/french.stackexchange.com.json.gz\n",
"upload: ./codereview.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/codereview.stackexchange.com.json.gz\n",
"upload: ./softwarerecs.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/softwarerecs.stackexchange.com.json.gz\n",
"upload: ./rus.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/rus.stackexchange.com.json.gz\n",
"upload: ./money.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/money.stackexchange.com.json.gz\n",
"upload: ./philosophy.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/philosophy.stackexchange.com.json.gz\n",
"upload: ./chemistry.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/chemistry.stackexchange.com.json.gz\n",
"upload: ./meta.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/meta.stackexchange.com.json.gz\n",
"upload: ./cstheory.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/cstheory.stackexchange.com.json.gz\n",
"upload: ./space.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/space.stackexchange.com.json.gz\n",
"upload: ./politics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/politics.stackexchange.com.json.gz\n",
"upload: ./ell.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/ell.stackexchange.com.json.gz\n",
"upload: ./puzzling.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/puzzling.stackexchange.com.json.gz\n",
"upload: ./astronomy.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/astronomy.stackexchange.com.json.gz\n",
"upload: ./worldbuilding.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/worldbuilding.stackexchange.com.json.gz\n",
"upload: ./economics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/economics.stackexchange.com.json.gz\n",
"upload: ./workplace.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/workplace.stackexchange.com.json.gz\n",
"upload: ./tex.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/tex.stackexchange.com.json.gz\n",
"upload: ./android.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/android.stackexchange.com.json.gz\n",
"upload: ./gis.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gis.stackexchange.com.json.gz\n",
"upload: ./dsp.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/dsp.stackexchange.com.json.gz\n",
"upload: ./superuser.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/superuser.com.json.gz\n",
"upload: ./english.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/english.stackexchange.com.json.gz\n",
"upload: ./meta.serverfault.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/meta.serverfault.com.json.gz\n",
"upload: ./scicomp.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/scicomp.stackexchange.com.json.gz\n",
"upload: ./askubuntu.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/askubuntu.com.json.gz\n",
"upload: ./french.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/french.stackexchange.com.json.gz\n",
"upload: ./coffee.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/coffee.stackexchange.com.json.gz\n",
"upload: ./codereview.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/codereview.stackexchange.com.json.gz\n",
"upload: ./sound.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/sound.stackexchange.com.json.gz\n",
"upload: ./opensource.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/opensource.stackexchange.com.json.gz\n",
"upload: ./woodworking.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/woodworking.stackexchange.com.json.gz\n",
"upload: ./outdoors.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/outdoors.stackexchange.com.json.gz\n",
"upload: ./reddit_title_text_2018.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2018.json.gz\n",
"upload: ./reddit_title_text_2011.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2011.json.gz\n",
"upload: ./reddit_title_text_2020.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2020.json.gz\n",
"upload: ./reddit_title_text_2012.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2012.json.gz\n",
"upload: ./reddit_title_text_2021.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2021.json.gz\n",
"upload: ./reddit_title_text_2019.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2019.json.gz\n",
"upload: ./reddit_title_text_2010.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2010.json.gz\n",
"upload: ./reddit_title_text_2014.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2014.json.gz\n",
"\u001b[32mDone\u001b[0m\n",
"Total files uploaded: 12\n",
"\n",
"\n",
"Downloading 9 HuggingFace datasets into s3://lodestone-rnd/data/\n",
"Downloading dataset S2ORC_citations_abstracts (39,567,485 pairs) ... "
]
}
],
"source": [
"# DOWNLOAD GITHUB DATASETS (STACKEXCHANGE (https://huggingface.co/flax-sentence-embeddings) & REDDIT (https://huggingface.co/datasets/sentence-transformers/reddit-title-body))\n",
"\n",
"# these are the files marked as unsafe by HuggingFace when viewing the each of the datasets' pages\n",
"unsafe = [[\"serverfault.com.jsonl.gz\", \"security.stackexchange.com.jsonl.gz\"],\n",
" [\"monero.stackexchange.com.jsonl.gz\", \"serverfault.com.jsonl.gz\", \"security.stackexchange.com.jsonl.gz\"],\n",
" [\"elementaryos.stackexchange.com.jsonl.gz\", \"monero.stackexchange.com.jsonl.gz\", \"security.stackexchange.com.jsonl.gz\"],\n",
" [\"\"]]\n",
"\n",
"file_counts = []\n",
"print('Downloading {:,} StackExchange GitHub datasets into s3://lodestone-rnd/data/'.format(len(stacks)))\n",
"for i, stack in enumerate(stacks):\n",
" # get the names of all the files in the repository that are not unsafe\n",
" files = [file for file in os.listdir(f'/home/ec2-user/SageMaker/{stack}') if file.endswith(\".jsonl.gz\")==True if file not in unsafe[i]]\n",
" file_counts.append(len(files))\n",
" os.chdir(f'/home/ec2-user/SageMaker/{stack}')\n",
" print('Downloading dataset {} ({} files) ... '.format(stack, len(files)), end='', flush=True)\n",
" # sequentially pull each dataset from git lfs, stream it to S3, and then delete the local copy to free up disk memory\n",
" for file_name in files:\n",
" os.system(f'git lfs pull --include={file_name}')\n",
" os.system(f'aws s3 cp {file_name} s3://lodestone-rnd/data/{stack}/{file_name[:-9] + \".json.gz\"}')\n",
" os.remove(file_name)\n",
" os.system('rm -r .git/lfs/objects/*')\n",
" if len(os.listdir('.git/objects/pack')) == 4:\n",
" os.system('ls -t .git/objects/pack/* | head -2 | xargs rm --')\n",
" print('\\033[32m' + 'Done' + '\\033[0m')\n",
"print(f'Total files uploaded: {sum(file_counts)}')\n",
"\n",
"print(\"\\n\")\n",
"\n",
"print('Downloading {:,} Reddit GitHub dataset into s3://lodestone-rnd/data/'.format(1))\n",
"# get the names of all the files in the repository\n",
"files = [file for file in os.listdir(f'/home/ec2-user/SageMaker/reddit-title-body') if file.endswith(\".jsonl.gz\")==True]\n",
"os.chdir(f'/home/ec2-user/SageMaker/reddit-title-body')\n",
"print('Downloading dataset {} ({} files) ... '.format(\"reddit-title-body\", len(files)), end='', flush=True)\n",
"# sequentially pull each dataset from git lfs, stream it to S3, and then delete the local copy to free up disk memory\n",
"for file_name in files:\n",
" os.system(f'git lfs pull --include={file_name}')\n",
" os.system(f'aws s3 cp {file_name} s3://lodestone-rnd/data/reddit-title-body/{file_name[:-9] + \".json.gz\"}')\n",
" os.remove(file_name)\n",
" os.system('rm -r .git/lfs/objects/*')\n",
" if len(os.listdir('.git/objects/pack')) == 4:\n",
" os.system('ls -t .git/objects/pack/* | head -2 | xargs rm --')\n",
"print('\\033[32m' + 'Done' + '\\033[0m')\n",
"print(f'Total files uploaded: {len(files)}')\n",
"\n",
"os.chdir('/home/ec2-user/SageMaker')\n",
"\n",
"print(\"\\n\")\n",
"\n",
"# DOWNLOAD HUGGINGFACE DATASETS (https://huggingface.co/datasets/sentence-transformers/embedding-training-data)\n",
"\n",
"# read dataset information from HuggingFace_datasets.tsv\n",
"datasets = pd.read_csv(\n",
" 'HuggingFace_datasets.tsv',\n",
" index_col=0,\n",
" sep='\\t',\n",
" dtype={\n",
" 'Description': str,\n",
" 'Size (#Pairs)': str,\n",
" 'Performance': float,\n",
" 'Download link': str,\n",
" 'Source': str})\n",
"datasets['Size (#Pairs)'] = datasets['Size (#Pairs)'].str.replace(',', '').astype(int)\n",
"datasets = datasets.to_dict(orient='index')\n",
"\n",
"print('Downloading {:,} HuggingFace datasets into s3://lodestone-rnd/data/'.format(len(datasets)))\n",
"\n",
"# stream each of the datasets from the URL provided into S3\n",
"# (note that S2ORC_citations_abstracts is larger than 50GB and therefore requires the expected size to be passed into the command line as well)\n",
"for d in datasets.keys():\n",
" print('Downloading dataset {} ({:,} pairs) ... '.format(d, datasets[d]['Size (#Pairs)']), end='', flush=True)\n",
" if d == \"S2ORC_citations_abstracts\":\n",
" os.system(f'wget -qO- {datasets[d][\"Download link\"]} | aws s3 cp - s3://lodestone-rnd/data/{d + \".json.gz\"} --expected-size 120259084288')\n",
" else:\n",
" os.system(f'wget -qO- {datasets[d][\"Download link\"]} | aws s3 cp - s3://lodestone-rnd/data/{d + \".json.gz\"}')\n",
" print('\\033[32m' + 'Done' + '\\033[0m')\n",
"\n",
"print(\"\\n\")\n",
"\n",
"# DOWNLOAD GOOGLE SHEETS DATASETS (https://docs.google.com/spreadsheets/d/1vXJrIg38cEaKjOG5y4I4PQwAQFUmCkohbViJ9zj_Emg/edit#gid=0)\n",
"\n",
"# read dataset information from GoogleSheets_datasets.tsv\n",
"datasets = pd.read_csv(\n",
" 'GoogleSheets_datasets.tsv',\n",
" index_col=0,\n",
" sep='\\t',\n",
" dtype={\n",
" 'Description': str,\n",
" 'Size (#Pairs)': str,\n",
" 'Performance': float,\n",
" 'Download link': str,\n",
" 'Source': str})\n",
"datasets['Size (#Pairs)'] = datasets['Size (#Pairs)'].str.replace(',', '').astype(int)\n",
"datasets = datasets.to_dict(orient='index')\n",
"\n",
"print('Downloading {:,} 1B+ Google Sheets datasets into s3://lodestone-rnd/data/'.format(len(datasets)))\n",
"\n",
"# stream each of the datasets from the URL provided into S3\n",
"for d in datasets.keys():\n",
" print('Downloading dataset {} ({:,} pairs) ... '.format(d, datasets[d]['Size (#Pairs)']), end='', flush=True)\n",
" os.system(f'wget -qO- {datasets[d][\"Download link\"]} | aws s3 cp - s3://lodestone-rnd/data/{d + \".json.gz\"}')\n",
" print('\\033[32m' + 'Done' + '\\033[0m')\n",
"\n",
"print(\"\\n\")\n",
" \n",
"print(f'Successfully downloaded 50 datasets and {621+12+9+36} files into s3://lodestone-rnd/data/')"
]
},
{
"cell_type": "code",
"execution_count": 1,
"id": "216d4564-6b69-4688-94ec-a67287134a2d",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"# clean up (remove the cloned repositories)\n",
"import shutil\n",
"shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_title_body_jsonl\")\n",
"shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_titlebody_best_voted_answer_jsonl\")\n",
"shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_title_best_voted_answer_jsonl\")\n",
"shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_titlebody_best_and_down_voted_answer_jsonl\")\n",
"shutil.rmtree(\"/home/ec2-user/SageMaker/reddit-title-body\")\n",
"shutil.rmtree(\"/home/ec2-user/SageMaker/1B_sentence_embeddings\")"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "conda_pytorch_p310",
"language": "python",
"name": "conda_pytorch_p310"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.10"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
|