{ "train": { "seed": 516, "n_epochs": 20, "n_report_steps": 10000, "analyze_epochs": 1, "validate_epochs": 1, "grad_accumulate": 8, "n_samples": 256 }, "optimization": { "clip_grad": true, "lr": 0.0001, "resume": false, "weight_decay": 1e-12, "factor": 0.8, "patience": 2, "min_lr": 1e-06, "ema_decay": 0.9999 }, "dynamics": { "tanh": false, "attention": false, "beta1": 3.0, "atom_order": 2, "edge_order": 3, "hidden_dim": 256, "n_layers": 4, "atom_dim": 13, "edge_dim": 5, "t_dim": 1, "name": "egnn_b", "sample_steps": 2000, "sigma1_pos": 0.0005, "t_min": 0.0001, "w_edge": 10, "error_warmup_edge": 2 }, "dataset": { "name": "drugs", "smiles_file": "./data/drugs/smiles.pkl", "train_data": "./data/drugs/train_data.pkl", "valid_data": "./data/drugs/val_data.pkl", "batch_size": 8, "num_workers": 0, "remove_h": false } }