cxrmate-ed / utils.py
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import torch
def compute_time_delta(event_time, reference_time, time_delta_map, denominator = 3600, to_tensor=True):
"""
How to we transform time delta inputs? It appears that minutes are used as the input to
a weight matrix in "Self-Supervised Transformer for Sparse and Irregularly Sampled Multivariate
Clinical Time-Series". This is almost confirmed by the CVE class defined here:
https://github.com/sindhura97/STraTS/blob/main/strats_notebook.ipynb, where the input has
a size of one.
"""
time_delta = reference_time - event_time
time_delta = time_delta.total_seconds() / (denominator)
assert isinstance(time_delta, float), f'time_delta should be float, not {type(time_delta)}.'
if time_delta < 0:
raise ValueError(f'time_delta should be greater than or equal to zero, not {time_delta}.')
time_delta = time_delta_map(time_delta)
if to_tensor:
time_delta = torch.tensor(time_delta)
return time_delta