update loading script
Browse files
genomics-long-range-benchmark.py
CHANGED
@@ -251,7 +251,6 @@ class CagePredictionHandler(GenomicLRATaskHandler):
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"""
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target_files = self.target_files_by_split[split]
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-
sequence_length = self.sequence_length
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key = 0
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coordinates_dataframe = pd.read_csv(self.coordinate_csv_file)
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@@ -265,7 +264,7 @@ class CagePredictionHandler(GenomicLRATaskHandler):
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padded_sequence = pad_sequence(
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chromosome=self.reference_genome[chromosome],
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start=start,
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sequence_length=sequence_length,
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end=stop,
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)
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"""
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target_files = self.target_files_by_split[split]
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key = 0
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coordinates_dataframe = pd.read_csv(self.coordinate_csv_file)
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padded_sequence = pad_sequence(
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chromosome=self.reference_genome[chromosome],
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start=start,
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+
sequence_length=self.sequence_length,
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end=stop,
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)
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