VatsalPatel18
commited on
Commit
•
9c201cb
1
Parent(s):
e26b9f5
Initial Commit
Browse filesThis view is limited to 50 files because it contains too many changes.
See raw diff
- .gitattributes +77 -0
- CPTAC/BRCA/BRCA_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt +3 -0
- CPTAC/BRCA/BRCA_RNAseq_gene_fusion_Tumor.txt +0 -0
- CPTAC/BRCA/BRCA_RNAseq_isoform_FPKM_log2_Tumor.txt +3 -0
- CPTAC/BRCA/BRCA_Tumor_CaseList.txt +122 -0
- CPTAC/BRCA/BRCA_WES_CNV_gene_gistic_level.txt +3 -0
- CPTAC/BRCA/BRCA_WES_CNV_gene_ratio_log2.txt +3 -0
- CPTAC/BRCA/BRCA_meta.txt +124 -0
- CPTAC/BRCA/BRCA_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt +0 -0
- CPTAC/BRCA/BRCA_phenotype.txt +0 -0
- CPTAC/BRCA/BRCA_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
- CPTAC/BRCA/BRCA_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
- CPTAC/BRCA/BRCA_somatic_mutation.maf +3 -0
- CPTAC/BRCA/BRCA_somatic_mutation_gene_level_binary.txt +0 -0
- CPTAC/BRCA/BRCA_survival.txt +123 -0
- CPTAC/CCRCC/CCRCC_Normal_CaseList.txt +80 -0
- CPTAC/CCRCC/CCRCC_RNAseq_circRNA_RSEM_UQ_log2_Normal.txt +0 -0
- CPTAC/CCRCC/CCRCC_RNAseq_circRNA_RSEM_UQ_log2_Tumor.txt +0 -0
- CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt +3 -0
- CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt +3 -0
- CPTAC/CCRCC/CCRCC_RNAseq_gene_fusion_Tumor.txt +0 -0
- CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Normal.txt +3 -0
- CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Tumor.txt +3 -0
- CPTAC/CCRCC/CCRCC_Tumor_CaseList.txt +103 -0
- CPTAC/CCRCC/CCRCC_WES_CNV_gene_gistic_level.txt +3 -0
- CPTAC/CCRCC/CCRCC_WES_CNV_gene_ratio_log2.txt +3 -0
- CPTAC/CCRCC/CCRCC_meta.txt +105 -0
- CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Normal.txt +0 -0
- CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Tumor.txt +3 -0
- CPTAC/CCRCC/CCRCC_miRNAseq_mature_miRNA_RPM_log2_Normal.txt +0 -0
- CPTAC/CCRCC/CCRCC_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt +0 -0
- CPTAC/CCRCC/CCRCC_phenotype.txt +0 -0
- CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt +3 -0
- CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
- CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt +3 -0
- CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
- CPTAC/CCRCC/CCRCC_somatic_mutation.maf +0 -0
- CPTAC/CCRCC/CCRCC_somatic_mutation_gene_level_binary.txt +0 -0
- CPTAC/CCRCC/CCRCC_survival.txt +104 -0
- CPTAC/COAD/COAD_Normal_CaseList.txt +100 -0
- CPTAC/COAD/COAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt +3 -0
- CPTAC/COAD/COAD_RNAseq_gene_fusion_Tumor.txt +0 -0
- CPTAC/COAD/COAD_RNAseq_isoform_FPKM_log2_Tumor.txt +3 -0
- CPTAC/COAD/COAD_Tumor_CaseList.txt +110 -0
- CPTAC/COAD/COAD_WES_CNV_gene_gistic_level.txt +3 -0
- CPTAC/COAD/COAD_WES_CNV_gene_ratio_log2.txt +3 -0
- CPTAC/COAD/COAD_meta.txt +111 -0
- CPTAC/COAD/COAD_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt +0 -0
- CPTAC/COAD/COAD_phenotype.txt +0 -0
- CPTAC/COAD/COAD_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt +3 -0
.gitattributes
CHANGED
@@ -53,3 +53,80 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
|
53 |
*.jpg filter=lfs diff=lfs merge=lfs -text
|
54 |
*.jpeg filter=lfs diff=lfs merge=lfs -text
|
55 |
*.webp filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
53 |
*.jpg filter=lfs diff=lfs merge=lfs -text
|
54 |
*.jpeg filter=lfs diff=lfs merge=lfs -text
|
55 |
*.webp filter=lfs diff=lfs merge=lfs -text
|
56 |
+
CPTAC/BRCA/BRCA_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
57 |
+
CPTAC/BRCA/BRCA_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
58 |
+
CPTAC/BRCA/BRCA_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
59 |
+
CPTAC/BRCA/BRCA_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
60 |
+
CPTAC/BRCA/BRCA_somatic_mutation.maf filter=lfs diff=lfs merge=lfs -text
|
61 |
+
CPTAC/BRCA/BRCA_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
62 |
+
CPTAC/BRCA/BRCA_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
63 |
+
CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
64 |
+
CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
65 |
+
CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
66 |
+
CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
67 |
+
CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
68 |
+
CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
69 |
+
CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
70 |
+
CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
71 |
+
CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
72 |
+
CPTAC/CCRCC/CCRCC_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
73 |
+
CPTAC/CCRCC/CCRCC_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
74 |
+
CPTAC/COAD/COAD_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
75 |
+
CPTAC/COAD/COAD_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
76 |
+
CPTAC/COAD/COAD_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
77 |
+
CPTAC/COAD/COAD_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
78 |
+
CPTAC/COAD/COAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
79 |
+
CPTAC/COAD/COAD_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
80 |
+
CPTAC/COAD/COAD_somatic_mutation.maf filter=lfs diff=lfs merge=lfs -text
|
81 |
+
CPTAC/COAD/COAD_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
82 |
+
CPTAC/COAD/COAD_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
83 |
+
CPTAC/GBM/GBM_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
84 |
+
CPTAC/GBM/GBM_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
85 |
+
CPTAC/GBM/GBM_RNAseq_gene_fusion_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
86 |
+
CPTAC/GBM/GBM_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
87 |
+
CPTAC/GBM/GBM_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
88 |
+
CPTAC/GBM/GBM_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
89 |
+
CPTAC/GBM/GBM_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
90 |
+
CPTAC/HNSCC/HNSCC_methylation_gene_beta_value_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
91 |
+
CPTAC/HNSCC/HNSCC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
92 |
+
CPTAC/HNSCC/HNSCC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
93 |
+
CPTAC/HNSCC/HNSCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
94 |
+
CPTAC/HNSCC/HNSCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
95 |
+
CPTAC/HNSCC/HNSCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
96 |
+
CPTAC/HNSCC/HNSCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
97 |
+
CPTAC/HNSCC/HNSCC_RNAseq_isoform_FPKM_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
98 |
+
CPTAC/HNSCC/HNSCC_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
99 |
+
CPTAC/HNSCC/HNSCC_somatic_mutation.maf filter=lfs diff=lfs merge=lfs -text
|
100 |
+
CPTAC/HNSCC/HNSCC_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
101 |
+
CPTAC/HNSCC/HNSCC_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
102 |
+
CPTAC/LSCC/LSCC_methylation_gene_beta_value_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
103 |
+
CPTAC/LSCC/LSCC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
104 |
+
CPTAC/LSCC/LSCC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
105 |
+
CPTAC/LSCC/LSCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
106 |
+
CPTAC/LSCC/LSCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
107 |
+
CPTAC/LSCC/LSCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
108 |
+
CPTAC/LSCC/LSCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
109 |
+
CPTAC/LSCC/LSCC_RNAseq_isoform_FPKM_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
110 |
+
CPTAC/LSCC/LSCC_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
111 |
+
CPTAC/LSCC/LSCC_somatic_mutation.maf filter=lfs diff=lfs merge=lfs -text
|
112 |
+
CPTAC/LSCC/LSCC_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
113 |
+
CPTAC/LSCC/LSCC_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
114 |
+
CPTAC/LUAD/LUAD_methylation_gene_beta_value_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
115 |
+
CPTAC/LUAD/LUAD_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
116 |
+
CPTAC/LUAD/LUAD_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
117 |
+
CPTAC/LUAD/LUAD_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
118 |
+
CPTAC/LUAD/LUAD_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
119 |
+
CPTAC/LUAD/LUAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
120 |
+
CPTAC/LUAD/LUAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
121 |
+
CPTAC/LUAD/LUAD_RNAseq_isoform_FPKM_log2_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
122 |
+
CPTAC/LUAD/LUAD_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
123 |
+
CPTAC/LUAD/LUAD_somatic_mutation.maf filter=lfs diff=lfs merge=lfs -text
|
124 |
+
CPTAC/LUAD/LUAD_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
125 |
+
CPTAC/LUAD/LUAD_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
126 |
+
CPTAC/PDAC/PDAC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt filter=lfs diff=lfs merge=lfs -text
|
127 |
+
CPTAC/PDAC/PDAC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
128 |
+
CPTAC/PDAC/PDAC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
129 |
+
CPTAC/PDAC/PDAC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
130 |
+
CPTAC/PDAC/PDAC_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
|
131 |
+
CPTAC/PDAC/PDAC_WES_CNV_gene_gistic_level.txt filter=lfs diff=lfs merge=lfs -text
|
132 |
+
CPTAC/PDAC/PDAC_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
|
CPTAC/BRCA/BRCA_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:1d7a10c7ed2df611ec807e08e0f8e0694689a8582f9c3a98fbc34235b002d819
|
3 |
+
size 33078031
|
CPTAC/BRCA/BRCA_RNAseq_gene_fusion_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/BRCA/BRCA_RNAseq_isoform_FPKM_log2_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:c9e071a8b393e75832673b3fd4d3a1754c4a7d25ac2ac0104c2e03f832f43ca9
|
3 |
+
size 45941023
|
CPTAC/BRCA/BRCA_Tumor_CaseList.txt
ADDED
@@ -0,0 +1,122 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
604
|
2 |
+
01BR044
|
3 |
+
01BR001
|
4 |
+
01BR008
|
5 |
+
01BR009
|
6 |
+
01BR010
|
7 |
+
01BR015
|
8 |
+
01BR017
|
9 |
+
01BR018
|
10 |
+
01BR020
|
11 |
+
01BR023
|
12 |
+
01BR025
|
13 |
+
01BR026
|
14 |
+
01BR027
|
15 |
+
01BR030
|
16 |
+
01BR031
|
17 |
+
01BR032
|
18 |
+
01BR033
|
19 |
+
01BR040
|
20 |
+
01BR042
|
21 |
+
01BR043
|
22 |
+
03BR002
|
23 |
+
03BR004
|
24 |
+
03BR005
|
25 |
+
03BR006
|
26 |
+
03BR010
|
27 |
+
03BR011
|
28 |
+
03BR013
|
29 |
+
05BR001
|
30 |
+
05BR003
|
31 |
+
05BR004
|
32 |
+
05BR005
|
33 |
+
05BR009
|
34 |
+
05BR016
|
35 |
+
05BR026
|
36 |
+
05BR029
|
37 |
+
05BR038
|
38 |
+
05BR042
|
39 |
+
05BR043
|
40 |
+
05BR044
|
41 |
+
05BR045
|
42 |
+
06BR003
|
43 |
+
06BR005
|
44 |
+
06BR006
|
45 |
+
06BR014
|
46 |
+
09BR001
|
47 |
+
09BR004
|
48 |
+
09BR005
|
49 |
+
09BR007
|
50 |
+
11BR003
|
51 |
+
11BR004
|
52 |
+
11BR006
|
53 |
+
11BR009
|
54 |
+
11BR010
|
55 |
+
11BR011
|
56 |
+
11BR012
|
57 |
+
11BR013
|
58 |
+
11BR014
|
59 |
+
11BR015
|
60 |
+
11BR016
|
61 |
+
11BR017
|
62 |
+
11BR018
|
63 |
+
11BR019
|
64 |
+
11BR020
|
65 |
+
11BR022
|
66 |
+
11BR023
|
67 |
+
11BR024
|
68 |
+
11BR025
|
69 |
+
11BR027
|
70 |
+
11BR028
|
71 |
+
11BR030
|
72 |
+
11BR031
|
73 |
+
11BR032
|
74 |
+
11BR036
|
75 |
+
11BR038
|
76 |
+
11BR040
|
77 |
+
11BR042
|
78 |
+
11BR043
|
79 |
+
11BR044
|
80 |
+
11BR047
|
81 |
+
11BR049
|
82 |
+
11BR050
|
83 |
+
11BR051
|
84 |
+
11BR053
|
85 |
+
11BR054
|
86 |
+
11BR055
|
87 |
+
11BR056
|
88 |
+
11BR058
|
89 |
+
11BR059
|
90 |
+
11BR060
|
91 |
+
11BR072
|
92 |
+
11BR073
|
93 |
+
11BR074
|
94 |
+
11BR075
|
95 |
+
11BR080
|
96 |
+
13BR009
|
97 |
+
14BR005
|
98 |
+
14BR008
|
99 |
+
14BR014
|
100 |
+
15BR003
|
101 |
+
16BR012
|
102 |
+
18BR002
|
103 |
+
18BR003
|
104 |
+
18BR004
|
105 |
+
18BR006
|
106 |
+
18BR007
|
107 |
+
18BR009
|
108 |
+
18BR010
|
109 |
+
18BR016
|
110 |
+
18BR017
|
111 |
+
18BR019
|
112 |
+
20BR001
|
113 |
+
20BR002
|
114 |
+
20BR005
|
115 |
+
20BR006
|
116 |
+
20BR007
|
117 |
+
20BR008
|
118 |
+
21BR001
|
119 |
+
21BR002
|
120 |
+
21BR010
|
121 |
+
22BR005
|
122 |
+
22BR006
|
CPTAC/BRCA/BRCA_WES_CNV_gene_gistic_level.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:a524f1c2f3a0e24e4a3c1e8f4fe15e76f7db48a43b5d122833eebce78ca28291
|
3 |
+
size 15790232
|
CPTAC/BRCA/BRCA_WES_CNV_gene_ratio_log2.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:54e23edafc90c7b7e07f6cc4fae55201a6b76fbf478ee23ade7a60e56e981ddf
|
3 |
+
size 45799229
|
CPTAC/BRCA/BRCA_meta.txt
ADDED
@@ -0,0 +1,124 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
case_id Age Sex Tumor_Size_cm Histologic_Grade Tumor_necrosis Path_Stage_pT Path_Stage_pN Stage BMI Tobacco_smoking_history MAP3K1_mutation GATA3_mutation PIK3CA_mutation TP53_mutation
|
2 |
+
data_type CON BIN CON ORD BIN ORD ORD ORD CON ORD BIN BIN BIN BIN
|
3 |
+
01BR001 55 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 0
|
4 |
+
01BR015 35 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 1
|
5 |
+
01BR017 45 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 1
|
6 |
+
01BR018 66 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 1
|
7 |
+
01BR025 62 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0
|
8 |
+
01BR026 48 Female NA NA NA NA NA NA NA NA 0 0 0 1
|
9 |
+
01BR027 80 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
10 |
+
01BR030 84 Female NA NA NA pT3 pN1 Stage III NA NA 0 1 0 0
|
11 |
+
01BR031 61 Female NA NA NA pT3 pN3 Stage III NA NA 1 0 0 0
|
12 |
+
01BR032 46 Female NA NA NA pT4 pN0 Stage III NA NA 0 1 0 0
|
13 |
+
01BR033 40 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 0 0
|
14 |
+
01BR040 40 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
15 |
+
01BR042 58 Female NA NA NA pT2 NA Stage II NA NA 0 0 0 1
|
16 |
+
01BR043 59 Female NA NA NA NA pN1 Stage II NA NA 1 0 0 1
|
17 |
+
03BR002 60 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0
|
18 |
+
03BR004 88 Female NA NA NA pT2 pN1 Stage II NA NA 1 0 0 1
|
19 |
+
03BR005 61 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
20 |
+
03BR006 42 Female NA NA NA NA NA NA NA NA 0 0 0 1
|
21 |
+
03BR010 78 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 0
|
22 |
+
03BR011 71 Female NA NA NA NA NA NA NA NA 0 0 0 0
|
23 |
+
03BR013 52 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
24 |
+
05BR001 70 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 0
|
25 |
+
05BR003 37 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0
|
26 |
+
05BR004 46 Female NA NA NA NA NA NA NA NA 0 0 1 0
|
27 |
+
05BR005 50 Female NA NA NA pT1 pN0 Stage I NA NA 0 0 0 0
|
28 |
+
05BR009 64 Female NA NA NA pT3 pN3 Stage III NA NA 0 0 1 0
|
29 |
+
05BR016 78 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 0
|
30 |
+
05BR026 71 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
31 |
+
05BR029 61 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
32 |
+
05BR038 52 Female NA NA NA pT1 pN0 Stage I NA NA 1 0 1 1
|
33 |
+
05BR042 40 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
34 |
+
05BR043 50 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 1
|
35 |
+
05BR044 62 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
36 |
+
05BR045 60 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
37 |
+
06BR003 75 Female NA NA NA pT2 pN0 Stage II NA NA 0 1 0 0
|
38 |
+
06BR005 58 Female NA NA NA pT1 pN1 Stage II NA NA 0 0 0 0
|
39 |
+
06BR006 51 Female NA NA NA NA NA NA NA NA 0 0 1 0
|
40 |
+
06BR014 51 Female NA NA NA pT2 pN1 Stage II NA NA 1 0 1 0
|
41 |
+
09BR004 75 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
42 |
+
09BR005 38 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
43 |
+
09BR007 77 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 0 0
|
44 |
+
11BR003 53 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 0
|
45 |
+
11BR004 54 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
46 |
+
11BR006 54 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
47 |
+
11BR009 44 Female NA NA NA pT2 pN3 Stage III NA NA 0 0 0 0
|
48 |
+
11BR010 35 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 1
|
49 |
+
11BR011 71 Female NA NA NA pT2 pN2 Stage III NA NA 1 0 0 1
|
50 |
+
11BR012 77 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
51 |
+
11BR013 70 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 0
|
52 |
+
11BR014 39 Female NA NA NA pT2 pN2 Stage III NA NA 1 0 1 0
|
53 |
+
11BR015 60 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 0 0
|
54 |
+
11BR016 30 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
55 |
+
11BR017 74 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 1 1
|
56 |
+
11BR018 54 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 1 0
|
57 |
+
11BR019 61 Female NA NA NA pT2 pN0 Stage II NA NA 0 1 0 0
|
58 |
+
11BR020 37 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
59 |
+
11BR022 48 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 0
|
60 |
+
11BR023 58 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
61 |
+
11BR024 80 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
62 |
+
11BR025 77 Female NA NA NA pT2 pN0 Stage II NA NA 1 0 0 0
|
63 |
+
11BR027 76 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
64 |
+
11BR028 55 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
65 |
+
11BR030 50 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
66 |
+
11BR031 50 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
67 |
+
11BR032 49 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 0
|
68 |
+
11BR036 51 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
69 |
+
11BR038 47 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
70 |
+
11BR040 67 Female NA NA NA pT2 pN2 Stage III NA NA 0 1 0 0
|
71 |
+
11BR042 71 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
72 |
+
11BR043 36 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 0
|
73 |
+
11BR044 48 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 1 1
|
74 |
+
11BR047 59 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 0
|
75 |
+
11BR049 45 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 0 0
|
76 |
+
11BR050 54 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
77 |
+
11BR051 65 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 0 0
|
78 |
+
11BR053 61 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
79 |
+
11BR054 84 Female NA NA NA pT2 pN0 Stage II NA NA 0 1 0 0
|
80 |
+
11BR055 56 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
81 |
+
11BR056 52 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 1
|
82 |
+
11BR058 65 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
83 |
+
11BR059 45 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
84 |
+
11BR060 52 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 0
|
85 |
+
11BR072 70 Female NA NA NA pT2 pN3 Stage III NA NA 0 0 1 0
|
86 |
+
11BR073 64 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 0 1
|
87 |
+
11BR074 66 Female NA NA NA pT2 pN2 Stage III NA NA 0 1 0 0
|
88 |
+
11BR075 79 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 0 1
|
89 |
+
11BR080 68 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
90 |
+
13BR009 75 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0
|
91 |
+
14BR005 78 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
92 |
+
14BR008 66 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 1 0
|
93 |
+
14BR014 59 Female NA NA NA pT2 pN0 Stage II NA NA 1 0 0 0
|
94 |
+
15BR003 74 Female NA NA NA pT1 pN1 Stage II NA NA 0 1 0 0
|
95 |
+
16BR012 47 Female NA NA NA pT2 pN3 Stage III NA NA 1 0 1 0
|
96 |
+
18BR002 64 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 1 1
|
97 |
+
18BR003 65 Female NA NA NA pT2 pN0 Stage II NA NA 1 1 1 0
|
98 |
+
18BR004 76 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
99 |
+
18BR006 62 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
100 |
+
18BR007 64 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
101 |
+
18BR009 63 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 1 1
|
102 |
+
18BR010 41 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 1 0
|
103 |
+
18BR016 73 Female NA NA NA pT1 pN0 Stage I NA NA 0 0 1 0
|
104 |
+
18BR017 72 Female NA NA NA pT1 pN0 Stage I NA NA 0 0 0 0
|
105 |
+
18BR019 68 Female NA NA NA pT2 pN2 Stage III NA NA 0 0 0 0
|
106 |
+
20BR001 82 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 0
|
107 |
+
20BR002 90 Female NA NA NA pT2 NA Stage II NA NA 0 0 0 1
|
108 |
+
20BR005 47 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 0 1
|
109 |
+
20BR006 65 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 1
|
110 |
+
20BR007 55 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
111 |
+
20BR008 71 Female NA NA NA pT4 pN2 Stage III NA NA 0 0 1 0
|
112 |
+
21BR001 86 Female NA NA NA NA NA NA NA NA 0 0 0 1
|
113 |
+
21BR002 86 Female NA NA NA NA NA NA NA NA 0 0 1 0
|
114 |
+
21BR010 71 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 0
|
115 |
+
22BR005 46 Female NA NA NA pT2 pN1 Stage II NA NA 0 0 1 1
|
116 |
+
22BR006 55 Female NA NA NA pT3 pN1 Stage III NA NA 0 1 1 0
|
117 |
+
604 41 Female NA NA NA pT2 pN0 Stage II NA NA 0 0 0 1
|
118 |
+
01BR044 84 Female NA NA NA pT4 pN0 Stage III NA NA 0 0 1 1
|
119 |
+
09BR001 61 Female NA NA NA NA NA NA NA NA 0 0 0 0
|
120 |
+
01BR008 48 Female NA NA NA NA NA NA NA NA 0 0 0 1
|
121 |
+
01BR009 64 Female NA NA NA NA NA NA NA NA 0 0 0 1
|
122 |
+
01BR010 65 Female NA NA NA NA NA NA NA NA 0 0 1 0
|
123 |
+
01BR020 45 Female NA NA NA NA NA NA NA NA 0 0 0 1
|
124 |
+
01BR023 52 Female NA NA NA NA NA NA NA NA 0 0 0 0
|
CPTAC/BRCA/BRCA_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/BRCA/BRCA_phenotype.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/BRCA/BRCA_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:64b2f52e9148747a0380b088892cd5d31cce6ac044c97e8bef88d599e084e190
|
3 |
+
size 50633530
|
CPTAC/BRCA/BRCA_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e584331bc77a440af50692c7874b736b3d135d01d96ce95d66af18cc64009b21
|
3 |
+
size 21398351
|
CPTAC/BRCA/BRCA_somatic_mutation.maf
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:aa8b7ad5d7976815471633e49595dbd08abf11071054360f44fe229eb7dc9285
|
3 |
+
size 14314860
|
CPTAC/BRCA/BRCA_somatic_mutation_gene_level_binary.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/BRCA/BRCA_survival.txt
ADDED
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
case_id OS_days OS_event PFS_days PFS_event
|
2 |
+
01BR001 421 0 421 0
|
3 |
+
01BR015 347 0 347 0
|
4 |
+
01BR017 413 0 413 0
|
5 |
+
01BR018 384 0 384 0
|
6 |
+
01BR025 601 0 601 0
|
7 |
+
01BR026 NA NA NA 0
|
8 |
+
01BR027 351 0 351 0
|
9 |
+
01BR030 389 0 389 0
|
10 |
+
01BR031 363 0 363 0
|
11 |
+
01BR032 363 0 363 0
|
12 |
+
01BR033 351 0 351 0
|
13 |
+
01BR040 NA NA NA 0
|
14 |
+
01BR042 NA NA NA 0
|
15 |
+
01BR043 NA NA NA 0
|
16 |
+
03BR002 365 0 365 0
|
17 |
+
03BR004 358 0 358 0
|
18 |
+
03BR005 304 0 304 0
|
19 |
+
03BR006 NA NA NA 0
|
20 |
+
03BR010 357 0 357 0
|
21 |
+
03BR011 NA NA NA 0
|
22 |
+
03BR013 355 0 355 0
|
23 |
+
05BR001 363 0 363 0
|
24 |
+
05BR003 406 0 406 0
|
25 |
+
05BR004 NA NA NA 0
|
26 |
+
05BR005 528 0 528 0
|
27 |
+
05BR009 323 0 323 0
|
28 |
+
05BR016 308 0 308 0
|
29 |
+
05BR026 377 0 377 0
|
30 |
+
05BR029 342 0 342 0
|
31 |
+
05BR038 195 0 195 0
|
32 |
+
05BR042 NA NA NA 0
|
33 |
+
05BR043 NA NA NA 0
|
34 |
+
05BR044 NA NA NA 0
|
35 |
+
05BR045 NA NA NA 0
|
36 |
+
06BR003 323 0 323 0
|
37 |
+
06BR005 320 0 320 0
|
38 |
+
06BR006 137 0 NA 1
|
39 |
+
06BR014 357 0 357 0
|
40 |
+
09BR004 NA NA NA 0
|
41 |
+
09BR005 337 0 337 0
|
42 |
+
09BR007 329 0 329 0
|
43 |
+
11BR003 394 0 394 0
|
44 |
+
11BR004 405 0 405 0
|
45 |
+
11BR006 405 0 405 0
|
46 |
+
11BR009 406 0 406 0
|
47 |
+
11BR010 394 0 394 0
|
48 |
+
11BR011 402 0 402 0
|
49 |
+
11BR012 42 0 42 0
|
50 |
+
11BR013 378 0 378 0
|
51 |
+
11BR014 408 0 408 0
|
52 |
+
11BR015 386 0 386 0
|
53 |
+
11BR016 388 0 388 0
|
54 |
+
11BR017 221 1 NA 0
|
55 |
+
11BR018 377 0 377 0
|
56 |
+
11BR019 377 0 377 0
|
57 |
+
11BR020 367 0 367 0
|
58 |
+
11BR022 NA 0 13 0
|
59 |
+
11BR023 398 0 398 0
|
60 |
+
11BR024 393 0 393 0
|
61 |
+
11BR025 393 0 393 0
|
62 |
+
11BR027 385 0 385 0
|
63 |
+
11BR028 380 0 380 0
|
64 |
+
11BR030 377 0 377 0
|
65 |
+
11BR031 370 0 370 0
|
66 |
+
11BR032 369 0 369 0
|
67 |
+
11BR036 368 0 368 0
|
68 |
+
11BR038 385 0 385 0
|
69 |
+
11BR040 377 0 377 0
|
70 |
+
11BR042 374 0 374 0
|
71 |
+
11BR043 374 0 374 0
|
72 |
+
11BR044 382 0 382 0
|
73 |
+
11BR047 369 0 369 0
|
74 |
+
11BR049 379 0 379 0
|
75 |
+
11BR050 386 0 386 0
|
76 |
+
11BR051 379 0 379 0
|
77 |
+
11BR053 371 0 371 0
|
78 |
+
11BR054 376 0 376 0
|
79 |
+
11BR055 NA 0 13 0
|
80 |
+
11BR056 367 0 367 0
|
81 |
+
11BR058 378 0 378 0
|
82 |
+
11BR059 382 0 382 0
|
83 |
+
11BR060 385 0 385 0
|
84 |
+
11BR072 369 0 369 0
|
85 |
+
11BR073 368 0 368 0
|
86 |
+
11BR074 367 0 367 0
|
87 |
+
11BR075 362 0 362 0
|
88 |
+
11BR080 377 0 377 0
|
89 |
+
13BR009 NA NA NA 0
|
90 |
+
14BR005 517 0 517 0
|
91 |
+
14BR008 505 0 505 0
|
92 |
+
14BR014 448 0 448 0
|
93 |
+
15BR003 344 0 344 0
|
94 |
+
16BR012 478 0 478 0
|
95 |
+
18BR002 431 0 431 0
|
96 |
+
18BR003 426 0 426 0
|
97 |
+
18BR004 426 0 426 0
|
98 |
+
18BR006 419 0 419 0
|
99 |
+
18BR007 431 0 431 0
|
100 |
+
18BR009 417 0 417 0
|
101 |
+
18BR010 410 0 410 0
|
102 |
+
18BR016 449 0 449 0
|
103 |
+
18BR017 445 0 445 0
|
104 |
+
18BR019 437 0 437 0
|
105 |
+
20BR001 87 0 87 0
|
106 |
+
20BR002 NA 0 NA 0
|
107 |
+
20BR005 357 0 357 0
|
108 |
+
20BR006 327 0 327 0
|
109 |
+
20BR007 357 0 357 0
|
110 |
+
20BR008 347 0 347 0
|
111 |
+
21BR001 NA NA NA 0
|
112 |
+
21BR002 NA NA NA 0
|
113 |
+
21BR010 327 0 327 0
|
114 |
+
22BR005 348 0 348 0
|
115 |
+
22BR006 282 1 NA 0
|
116 |
+
604 NA NA NA 0
|
117 |
+
01BR044 NA NA NA 0
|
118 |
+
09BR001 NA NA NA 0
|
119 |
+
01BR008 NA NA NA 0
|
120 |
+
01BR009 NA NA NA 0
|
121 |
+
01BR010 NA NA NA 0
|
122 |
+
01BR020 NA NA NA 0
|
123 |
+
01BR023 NA NA NA 0
|
CPTAC/CCRCC/CCRCC_Normal_CaseList.txt
ADDED
@@ -0,0 +1,80 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
C3L-00004
|
2 |
+
C3L-00010
|
3 |
+
C3L-00011
|
4 |
+
C3L-00026
|
5 |
+
C3L-00079
|
6 |
+
C3L-00088
|
7 |
+
C3L-00096
|
8 |
+
C3L-00097
|
9 |
+
C3L-00103
|
10 |
+
C3L-00183
|
11 |
+
C3L-00360
|
12 |
+
C3L-00369
|
13 |
+
C3L-00416
|
14 |
+
C3L-00418
|
15 |
+
C3L-00447
|
16 |
+
C3L-00448
|
17 |
+
C3L-00561
|
18 |
+
C3L-00581
|
19 |
+
C3L-00583
|
20 |
+
C3L-00606
|
21 |
+
C3L-00607
|
22 |
+
C3L-00791
|
23 |
+
C3L-00814
|
24 |
+
C3L-00902
|
25 |
+
C3L-00907
|
26 |
+
C3L-00908
|
27 |
+
C3L-00910
|
28 |
+
C3L-00917
|
29 |
+
C3L-01281
|
30 |
+
C3L-01286
|
31 |
+
C3L-01287
|
32 |
+
C3L-01302
|
33 |
+
C3L-01313
|
34 |
+
C3L-01603
|
35 |
+
C3L-01607
|
36 |
+
C3L-01836
|
37 |
+
C3L-01861
|
38 |
+
C3L-01882
|
39 |
+
C3L-01885
|
40 |
+
C3N-00148
|
41 |
+
C3N-00149
|
42 |
+
C3N-00150
|
43 |
+
C3N-00168
|
44 |
+
C3N-00177
|
45 |
+
C3N-00194
|
46 |
+
C3N-00242
|
47 |
+
C3N-00244
|
48 |
+
C3N-00246
|
49 |
+
C3N-00310
|
50 |
+
C3N-00312
|
51 |
+
C3N-00317
|
52 |
+
C3N-00320
|
53 |
+
C3N-00390
|
54 |
+
C3N-00437
|
55 |
+
C3N-00491
|
56 |
+
C3N-00494
|
57 |
+
C3N-00495
|
58 |
+
C3N-00573
|
59 |
+
C3N-00577
|
60 |
+
C3N-00646
|
61 |
+
C3N-00733
|
62 |
+
C3N-00831
|
63 |
+
C3N-00834
|
64 |
+
C3N-00852
|
65 |
+
C3N-00953
|
66 |
+
C3N-01176
|
67 |
+
C3N-01178
|
68 |
+
C3N-01179
|
69 |
+
C3N-01200
|
70 |
+
C3N-01214
|
71 |
+
C3N-01220
|
72 |
+
C3N-01261
|
73 |
+
C3N-01361
|
74 |
+
C3N-01522
|
75 |
+
C3N-01524
|
76 |
+
C3N-01646
|
77 |
+
C3N-01648
|
78 |
+
C3N-01649
|
79 |
+
C3N-01651
|
80 |
+
C3N-01808
|
CPTAC/CCRCC/CCRCC_RNAseq_circRNA_RSEM_UQ_log2_Normal.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_RNAseq_circRNA_RSEM_UQ_log2_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e4505de10482e5738937ebe7c9b4239ffdc86e51cb092db7f2473e92040aa727
|
3 |
+
size 23810094
|
CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:bcef3edfb1fcc738859369d78f2b7edb3f0972d438b4b1f50a114519f2ab9a50
|
3 |
+
size 33113844
|
CPTAC/CCRCC/CCRCC_RNAseq_gene_fusion_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Normal.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:698c9f1558525cc106c2861c40d7237f9842fa803e16bfaa0eb3422a3511be6e
|
3 |
+
size 31624212
|
CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:3c60df5bcb21d10870eab68b4ff7427781d1f125e049a3e9a113d6de5e116aa8
|
3 |
+
size 44039252
|
CPTAC/CCRCC/CCRCC_Tumor_CaseList.txt
ADDED
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
C3L-00004
|
2 |
+
C3L-00010
|
3 |
+
C3L-00011
|
4 |
+
C3L-00026
|
5 |
+
C3L-00079
|
6 |
+
C3L-00088
|
7 |
+
C3L-00096
|
8 |
+
C3L-00097
|
9 |
+
C3L-00103
|
10 |
+
C3L-00183
|
11 |
+
C3L-00360
|
12 |
+
C3L-00369
|
13 |
+
C3L-00416
|
14 |
+
C3L-00418
|
15 |
+
C3L-00447
|
16 |
+
C3L-00448
|
17 |
+
C3L-00561
|
18 |
+
C3L-00581
|
19 |
+
C3L-00583
|
20 |
+
C3L-00606
|
21 |
+
C3L-00607
|
22 |
+
C3L-00610
|
23 |
+
C3L-00765
|
24 |
+
C3L-00766
|
25 |
+
C3L-00790
|
26 |
+
C3L-00791
|
27 |
+
C3L-00792
|
28 |
+
C3L-00796
|
29 |
+
C3L-00799
|
30 |
+
C3L-00800
|
31 |
+
C3L-00812
|
32 |
+
C3L-00813
|
33 |
+
C3L-00814
|
34 |
+
C3L-00817
|
35 |
+
C3L-00902
|
36 |
+
C3L-00907
|
37 |
+
C3L-00908
|
38 |
+
C3L-00910
|
39 |
+
C3L-00917
|
40 |
+
C3L-01281
|
41 |
+
C3L-01283
|
42 |
+
C3L-01286
|
43 |
+
C3L-01287
|
44 |
+
C3L-01288
|
45 |
+
C3L-01302
|
46 |
+
C3L-01313
|
47 |
+
C3L-01352
|
48 |
+
C3L-01553
|
49 |
+
C3L-01557
|
50 |
+
C3L-01560
|
51 |
+
C3L-01603
|
52 |
+
C3L-01607
|
53 |
+
C3L-01836
|
54 |
+
C3L-01861
|
55 |
+
C3L-01882
|
56 |
+
C3L-01885
|
57 |
+
C3N-00148
|
58 |
+
C3N-00149
|
59 |
+
C3N-00150
|
60 |
+
C3N-00154
|
61 |
+
C3N-00168
|
62 |
+
C3N-00177
|
63 |
+
C3N-00194
|
64 |
+
C3N-00242
|
65 |
+
C3N-00244
|
66 |
+
C3N-00246
|
67 |
+
C3N-00305
|
68 |
+
C3N-00310
|
69 |
+
C3N-00312
|
70 |
+
C3N-00314
|
71 |
+
C3N-00315
|
72 |
+
C3N-00317
|
73 |
+
C3N-00320
|
74 |
+
C3N-00380
|
75 |
+
C3N-00390
|
76 |
+
C3N-00437
|
77 |
+
C3N-00491
|
78 |
+
C3N-00494
|
79 |
+
C3N-00495
|
80 |
+
C3N-00573
|
81 |
+
C3N-00577
|
82 |
+
C3N-00646
|
83 |
+
C3N-00733
|
84 |
+
C3N-00831
|
85 |
+
C3N-00834
|
86 |
+
C3N-00852
|
87 |
+
C3N-00953
|
88 |
+
C3N-01176
|
89 |
+
C3N-01178
|
90 |
+
C3N-01179
|
91 |
+
C3N-01200
|
92 |
+
C3N-01213
|
93 |
+
C3N-01214
|
94 |
+
C3N-01220
|
95 |
+
C3N-01261
|
96 |
+
C3N-01361
|
97 |
+
C3N-01522
|
98 |
+
C3N-01524
|
99 |
+
C3N-01646
|
100 |
+
C3N-01648
|
101 |
+
C3N-01649
|
102 |
+
C3N-01651
|
103 |
+
C3N-01808
|
CPTAC/CCRCC/CCRCC_WES_CNV_gene_gistic_level.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:bb0cac04d358cd34e74a21ef163704fc5636316a1b6bc21f6f4a0adff1bf709a
|
3 |
+
size 14069561
|
CPTAC/CCRCC/CCRCC_WES_CNV_gene_ratio_log2.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d3cbff3ca5b96aab4f0cd82cd86275ace0ea73735d35a04fd0507e361c826bf7
|
3 |
+
size 41396772
|
CPTAC/CCRCC/CCRCC_meta.txt
ADDED
@@ -0,0 +1,105 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
case_id Age Sex Tumor_Size_cm Histologic_Grade Tumor_necrosis Path_Stage_pT Path_Stage_pN Stage BMI Tobacco_smoking_history KDM5C_mutation VHL_mutation BAP1_mutation PBRM1_mutation SETD2_mutation
|
2 |
+
data_type CON BIN CON ORD BIN ORD ORD ORD CON ORD BIN BIN BIN BIN BIN
|
3 |
+
C3L-00908 60 Female 10.5 G3 Poorly differentiated Not identified pT2 NA Stage II 27.85 past smoker 0 1 1 1 0
|
4 |
+
C3L-00004 72 Male 12 G3 Poorly differentiated Present pT3 NA Stage III 22.8 past smoker 0 1 0 1 1
|
5 |
+
C3L-00010 30 Male 6.5 G3 Poorly differentiated Not identified pT1 pN0 Stage I 34.15 current smoker 1 1 0 0 0
|
6 |
+
C3L-00011 63 Female 12 G4 Undifferentiated Present pT3 NA Stage IV 27.47 non-smoker 1 1 1 0 0
|
7 |
+
C3L-00026 65 Female 2 G3 Poorly differentiated Not identified pT1 NA Stage I 28.23 non-smoker 0 1 0 0 0
|
8 |
+
C3L-00079 49 Male 14 G3 Poorly differentiated Present pT3 pN1 Stage III 37.88 non-smoker 1 1 0 1 0
|
9 |
+
C3L-00088 72 Male 4 G2 Moderately differentiated Not identified pT3 NA Stage III 32.82 past smoker 0 1 0 0 0
|
10 |
+
C3L-00096 52 Male 12.3 G4 Undifferentiated Present pT3 pN0 Stage IV 27.44 non-smoker 0 1 0 0 0
|
11 |
+
C3L-00097 59 Male 3.7 G2 Moderately differentiated Not identified pT1 NA Stage I 36.81 past smoker 1 1 0 0 0
|
12 |
+
C3L-00103 56 Male 11 G3 Poorly differentiated Present pT3 pN0 Stage III 28.7 current smoker 0 1 0 0 0
|
13 |
+
C3L-00183 33 Female 6 G2 Moderately differentiated Present pT3 NA Stage III 36.39 current smoker 0 0 0 1 0
|
14 |
+
C3L-00360 72 Male 3.7 G3 Poorly differentiated Not identified pT2 NA Stage II 38.94 past smoker 0 1 0 0 0
|
15 |
+
C3L-00369 89 Male 12.5 G2 Moderately differentiated Present pT3 NA Stage III 27.35 non-smoker 0 1 0 1 0
|
16 |
+
C3L-00416 62 Male 6 G4 Undifferentiated Present pT3 NA Stage III 32 current smoker 0 0 1 1 1
|
17 |
+
C3L-00418 56 Female 8.7 G2 Moderately differentiated Not identified pT3 NA Stage III 59.88 NA 0 0 0 1 0
|
18 |
+
C3L-00447 35 Male 5.5 G3 Poorly differentiated Not identified pT1 NA Stage I 36.57 current smoker 0 1 0 0 0
|
19 |
+
C3L-00448 66 Male 1.5 G2 Moderately differentiated Not identified pT1 NA Stage I 26.18 past smoker 0 1 0 0 0
|
20 |
+
C3L-00561 50 Male 10 G4 Undifferentiated Present pT3 pN0 Stage III 27.47 non-smoker 0 1 0 0 0
|
21 |
+
C3L-00581 52 Male 13 G2 Moderately differentiated Not identified pT2 NA Stage II 33.66 non-smoker 0 1 1 0 0
|
22 |
+
C3L-00583 55 Male 4 G3 Poorly differentiated Not identified pT1 NA Stage I 37.72 non-smoker 1 1 0 1 0
|
23 |
+
C3L-00606 75 Female 7 G3 Poorly differentiated Not identified pT3 pN0 Stage III 42.33 past smoker 0 1 0 1 0
|
24 |
+
C3L-00607 66 Male 7.5 G3 Poorly differentiated Not identified pT3 NA Stage III 37.96 non-smoker 0 0 0 0 0
|
25 |
+
C3L-00610 57 Female 6.5 G3 Poorly differentiated Not identified pT1 NA Stage I 40.74 non-smoker 0 1 0 1 0
|
26 |
+
C3L-00765 61 Female 5.6 G2 Moderately differentiated Not identified pT1 NA Stage I 21.96 past smoker 0 0 0 0 0
|
27 |
+
C3L-00766 57 Female 2.8 G2 Moderately differentiated Not identified pT1 NA Stage I 68.59 NA 0 0 0 0 0
|
28 |
+
C3L-00790 44 Male 7 G2 Moderately differentiated Present pT1 NA Stage I 38.99 non-smoker 0 1 0 1 1
|
29 |
+
C3L-00791 76 Male 6.5 G3 Poorly differentiated Not identified pT1 pN1 Stage III 29.49 NA 0 1 0 1 1
|
30 |
+
C3L-00792 90 Female 8.7 G3 Poorly differentiated Not identified pT2 NA Stage II 29.6 non-smoker 0 1 1 0 0
|
31 |
+
C3L-00796 67 Male 5.5 G2 Moderately differentiated Present pT1 NA Stage I 30.81 current smoker 0 0 1 0 0
|
32 |
+
C3L-00799 41 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 35.66 NA 0 1 0 1 0
|
33 |
+
C3L-00800 41 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 29.01 NA 0 1 0 0 0
|
34 |
+
C3L-00812 74 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 27.04 NA 0 1 0 1 0
|
35 |
+
C3L-00813 61 Male 4 G3 Poorly differentiated Not identified pT3 NA Stage III 19.49 non-smoker 0 1 1 0 0
|
36 |
+
C3L-00814 83 Male 3 G2 Moderately differentiated Not identified pT1 NA Stage I 30.56 NA 0 1 0 1 1
|
37 |
+
C3L-00817 80 Male 1.2 G2 Moderately differentiated Not identified pT1 NA Stage I 33.96 NA 0 1 0 0 0
|
38 |
+
C3L-00902 69 Female 5 G1 Well differentiated Not identified pT1 NA Stage I 19.72 past smoker 0 1 0 0 0
|
39 |
+
C3L-00907 55 Male 4.8 G2 Moderately differentiated Not identified pT1 NA Stage I 47.25 past smoker 1 1 0 1 0
|
40 |
+
C3L-00910 75 Female 5 G3 Poorly differentiated Not identified pT1 NA Stage I 36.36 past smoker 0 1 0 1 0
|
41 |
+
C3L-00917 37 Male 3 G3 Poorly differentiated Not identified pT1 NA Stage I 45.37 NA 0 1 0 0 0
|
42 |
+
C3L-01281 66 Male 11.5 G4 Undifferentiated Not identified pT3 NA Stage IV 34.76 past smoker 0 1 0 1 0
|
43 |
+
C3L-01283 37 Male 2.4 G3 Poorly differentiated Not identified pT1 NA Stage I 30.86 non-smoker 0 1 0 0 0
|
44 |
+
C3L-01286 58 Male 6 G3 Poorly differentiated Present pT3 NA Stage III 46.17 non-smoker 0 0 0 1 1
|
45 |
+
C3L-01287 60 Male 10.5 G4 Undifferentiated Present pT3 NA Stage IV 25.31 non-smoker 0 1 1 0 0
|
46 |
+
C3L-01288 70 Female 2.8 G1 Well differentiated Not identified pT1 NA Stage I 39.45 current smoker 0 1 0 0 0
|
47 |
+
C3L-01302 71 Female 8.5 G4 Undifferentiated Present pT3 pN0 Stage III 36 non-smoker 0 0 0 1 0
|
48 |
+
C3L-01313 63 Male 9 G4 Undifferentiated Not identified pT3 NA Stage III 29.38 past smoker 0 1 1 0 0
|
49 |
+
C3L-01352 76 Female 3.4 G2 Moderately differentiated Present pT1 NA Stage I 26.95 non-smoker 0 0 0 0 1
|
50 |
+
C3L-01553 59 Male 1.9 G2 Moderately differentiated Not identified pT1 NA Stage I 46.17 NA 1 1 0 0 0
|
51 |
+
C3L-01557 51 Male 9.6 G3 Poorly differentiated Present pT3 pN0 Stage III 48.46 NA 0 1 0 1 0
|
52 |
+
C3L-01560 54 Female 1.5 G3 Poorly differentiated Not identified pT1 NA Stage I 38.08 NA 0 1 0 0 0
|
53 |
+
C3L-01603 63 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 42.77 past smoker 0 1 0 0 0
|
54 |
+
C3L-01607 83 Male 6.5 G3 Poorly differentiated Not identified pT3 NA Stage III 27.52 non-smoker 1 1 0 1 0
|
55 |
+
C3L-01836 47 Male 4.5 G3 Poorly differentiated Not identified pT1 NA Stage I 29.41 past smoker 0 1 0 1 0
|
56 |
+
C3L-01861 57 Male 3.5 G3 Poorly differentiated Not identified pT1 NA Stage I 28.63 past smoker 0 1 0 1 0
|
57 |
+
C3L-01882 48 Male 2.2 G2 Moderately differentiated Not identified pT1 pN0 Stage I 48.79 current smoker 0 0 0 0 0
|
58 |
+
C3L-01885 67 Male 3.5 G2 Moderately differentiated Not identified pT1 NA Stage I 35.27 past smoker 0 1 0 1 0
|
59 |
+
C3N-00148 52 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 28.41 NA 0 1 0 1 0
|
60 |
+
C3N-00149 68 Female 12 G3 Poorly differentiated Present pT4 pN0 Stage IV 27.05 NA 0 1 1 0 0
|
61 |
+
C3N-00150 55 Female 12 G3 Poorly differentiated Present pT3 pN0 Stage IV 18.42 NA 0 0 0 0 0
|
62 |
+
C3N-00154 68 Male 8 G3 Poorly differentiated Present pT2 pN0 Stage II 28.08 NA 0 1 0 1 0
|
63 |
+
C3N-00168 47 Male 4 G3 Poorly differentiated Not identified pT1 pN0 Stage I 18.78 current smoker 0 1 0 1 0
|
64 |
+
C3N-00177 52 Male 7 G2 Moderately differentiated Not identified pT3 pN0 Stage III 24.06 non-smoker 0 1 0 0 0
|
65 |
+
C3N-00194 51 Female 12 G3 Poorly differentiated Present pT2 NA Stage IV 26.96 current smoker 0 1 0 0 0
|
66 |
+
C3N-00242 69 Male 3.5 G2 Moderately differentiated Not identified pT1 NA Stage I 39.2 past smoker 1 1 0 1 0
|
67 |
+
C3N-00244 46 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 44.3 non-smoker 0 1 0 1 0
|
68 |
+
C3N-00246 44 Male 3.1 G2 Moderately differentiated Present pT1 NA Stage I 45.77 non-smoker 1 1 0 0 0
|
69 |
+
C3N-00305 60 Female 1 G1 Well differentiated Not identified pT1 NA Stage I 19 current smoker 0 1 0 1 0
|
70 |
+
C3N-00310 84 Male 5.5 G2 Moderately differentiated Not identified pT3 NA Stage III 28 past smoker 1 1 0 1 0
|
71 |
+
C3N-00312 68 Male 4 G3 Poorly differentiated Not identified pT3 NA Stage III 30 NA 0 1 0 1 0
|
72 |
+
C3N-00314 78 Male 4.5 G2 Moderately differentiated Not identified pT1 NA Stage I 31 past smoker 1 0 0 1 1
|
73 |
+
C3N-00315 68 Male 7 G3 Poorly differentiated Not identified pT1 NA Stage I 28 non-smoker 0 1 0 0 0
|
74 |
+
C3N-00317 74 Female 5.5 G2 Moderately differentiated Not identified pT1 NA Stage I 23 non-smoker 0 1 1 0 0
|
75 |
+
C3N-00320 67 Male 4 G2 Moderately differentiated Not identified pT3 NA Stage III 32 past smoker 0 1 0 1 0
|
76 |
+
C3N-00380 57 Female 4.1 G2 Moderately differentiated Not identified pT1 NA Stage I 46 non-smoker 0 1 0 1 0
|
77 |
+
C3N-00390 58 Male 14.1 G2 Moderately differentiated Not identified pT3 NA Stage IV 29.05 non-smoker 0 1 0 0 0
|
78 |
+
C3N-00437 69 Female 6 G3 Poorly differentiated Not identified pT3 NA Stage III 37 past smoker 0 1 1 0 1
|
79 |
+
C3N-00491 54 Male 6.5 G2 Moderately differentiated Not identified pT1 NA Stage IV 30 non-smoker 0 1 0 1 1
|
80 |
+
C3N-00494 66 Male 5.5 G2 Moderately differentiated Not identified pT1 NA Stage I 34 current smoker 0 1 0 1 0
|
81 |
+
C3N-00495 67 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 16 past smoker 1 1 0 0 0
|
82 |
+
C3N-00573 61 Male 11 G2 Moderately differentiated Not identified pT2 pN0 Stage II 22.04 non-smoker 0 1 0 0 0
|
83 |
+
C3N-00577 72 Male 14 G3 Poorly differentiated Not identified pT3 pN1 Stage IV 21.83 non-smoker 0 0 0 1 0
|
84 |
+
C3N-00646 57 Female 3.2 G2 Moderately differentiated Not identified pT1 NA Stage I 27.72 NA 0 0 1 0 0
|
85 |
+
C3N-00733 56 Male 8.6 G2 Moderately differentiated Present pT3 NA Stage III 27.77 non-smoker 0 1 0 1 0
|
86 |
+
C3N-00831 52 Male 8 G2 Moderately differentiated Not identified pT2 NA Stage II 30 NA 0 0 0 0 0
|
87 |
+
C3N-00834 65 Male 5 G1 Well differentiated Not identified pT1 NA Stage I 30 past smoker 0 1 0 0 0
|
88 |
+
C3N-00852 62 Male 13.6 G3 Poorly differentiated Not identified pT3 NA Stage III 28.71 non-smoker 1 1 0 1 0
|
89 |
+
C3N-00953 41 Male 8 G3 Poorly differentiated Present pT2 NA Stage II 22.43 non-smoker 0 1 1 0 0
|
90 |
+
C3N-01176 71 Male 6.5 G2 Moderately differentiated Not identified pT3 NA Stage III 29 non-smoker 0 1 0 0 0
|
91 |
+
C3N-01178 58 Female 7 G2 Moderately differentiated Not identified pT3 NA Stage III 25 past smoker 0 1 0 0 0
|
92 |
+
C3N-01179 72 Male 2.5 G2 Moderately differentiated Not identified pT3 NA Stage III 26 past smoker 0 1 0 1 0
|
93 |
+
C3N-01200 56 Female 16 G3 Poorly differentiated Present pT4 pN0 Stage IV 26.37 non-smoker 0 1 1 0 0
|
94 |
+
C3N-01213 68 Male 8.3 G1 Well differentiated Not identified pT3 NA Stage III 22.68 non-smoker 0 1 0 1 0
|
95 |
+
C3N-01214 60 Male 8.4 G2 Moderately differentiated Present pT2 pN0 Stage II 21.38 current smoker 0 0 1 0 0
|
96 |
+
C3N-01220 51 Male 6.8 G4 Undifferentiated Not identified pT3 NA Stage IV 23.89 current smoker 0 0 0 0 1
|
97 |
+
C3N-01261 67 Male 5.2 G1 Well differentiated Present pT1 NA Stage I 24.02 non-smoker 0 1 0 1 0
|
98 |
+
C3N-01361 48 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 39 non-smoker 0 1 0 0 0
|
99 |
+
C3N-01522 80 Male 5.5 G2 Moderately differentiated Not identified pT1 pN0 Stage I 30.78 non-smoker 1 0 0 1 1
|
100 |
+
C3N-01524 61 Male 8 G3 Poorly differentiated Not identified pT2 NA Stage II 28.38 non-smoker 0 1 0 0 0
|
101 |
+
C3N-01646 69 Male 10 G3 Poorly differentiated Not identified pT3 NA Stage III 25 current smoker 0 0 1 0 0
|
102 |
+
C3N-01648 69 Male 7.5 G2 Moderately differentiated Not identified pT2 NA Stage II 28 past smoker 0 0 0 0 0
|
103 |
+
C3N-01649 51 Male 8 G2 Moderately differentiated Not identified pT3 NA Stage III 35 past smoker 1 1 0 1 0
|
104 |
+
C3N-01651 58 Male 10 G3 Poorly differentiated Not identified pT2 NA Stage II 25 non-smoker 1 1 0 1 1
|
105 |
+
C3N-01808 47 Male 5.8 G2 Moderately differentiated Present pT1 NA Stage I 28.75 non-smoker 0 0 0 0 0
|
CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Normal.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ae7ea6fd9cb659175882d42068b579b77ff39d51eac720fcc81ee05164962f94
|
3 |
+
size 10571166
|
CPTAC/CCRCC/CCRCC_miRNAseq_mature_miRNA_RPM_log2_Normal.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_phenotype.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:0fb82e502a316db8ebd6950f536cc5ef6a6a0573d9d21e435f13b797f6cb43f0
|
3 |
+
size 36327869
|
CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e373b43f03df3ddb5c648f5af4b57e4caa61e767c911dfd5aa1b3ded1b772d98
|
3 |
+
size 46018835
|
CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:1b00d684cd99d870bee199128485c22d6cb079e0a01de3c044b7a4fdb1735618
|
3 |
+
size 13026061
|
CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:090077c25f0eeb59b737912f39dec98901db949e1f143bbc481d5cd731550f60
|
3 |
+
size 16629110
|
CPTAC/CCRCC/CCRCC_somatic_mutation.maf
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_somatic_mutation_gene_level_binary.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/CCRCC/CCRCC_survival.txt
ADDED
@@ -0,0 +1,104 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
case_id OS_days OS_event PFS_days PFS_event
|
2 |
+
C3L-00908 1785 0 1105 1
|
3 |
+
C3L-00004 384 0 384 0
|
4 |
+
C3L-00010 896 0 896 0
|
5 |
+
C3L-00011 241 1 229 0
|
6 |
+
C3L-00026 1769 0 1769 0
|
7 |
+
C3L-00079 274 1 245 0
|
8 |
+
C3L-00088 694 1 687 0
|
9 |
+
C3L-00096 71 1 68 0
|
10 |
+
C3L-00097 1735 0 1735 0
|
11 |
+
C3L-00103 1659 1 833 1
|
12 |
+
C3L-00183 227 0 227 0
|
13 |
+
C3L-00360 1780 0 1780 0
|
14 |
+
C3L-00369 91 1 91 0
|
15 |
+
C3L-00416 608 0 608 0
|
16 |
+
C3L-00418 1714 0 1714 0
|
17 |
+
C3L-00447 671 0 671 0
|
18 |
+
C3L-00448 1758 0 779 1
|
19 |
+
C3L-00561 1796 0 368 1
|
20 |
+
C3L-00581 1230 1 389 1
|
21 |
+
C3L-00583 301 0 301 0
|
22 |
+
C3L-00606 1045 1 780 1
|
23 |
+
C3L-00607 781 1 377 1
|
24 |
+
C3L-00610 1472 0 1472 0
|
25 |
+
C3L-00765 1414 0 1414 0
|
26 |
+
C3L-00766 266 0 266 0
|
27 |
+
C3L-00790 441 0 441 0
|
28 |
+
C3L-00791 708 0 708 0
|
29 |
+
C3L-00792 1419 0 1419 0
|
30 |
+
C3L-00796 333 0 333 0
|
31 |
+
C3L-00799 495 0 495 0
|
32 |
+
C3L-00800 344 0 344 0
|
33 |
+
C3L-00812 NA 0 NA 0
|
34 |
+
C3L-00813 NA 0 NA 0
|
35 |
+
C3L-00814 NA 0 15 0
|
36 |
+
C3L-00817 1365 0 1365 0
|
37 |
+
C3L-00902 1791 0 1791 0
|
38 |
+
C3L-00907 1791 0 1791 0
|
39 |
+
C3L-00910 1797 0 1797 0
|
40 |
+
C3L-00917 1783 0 1783 0
|
41 |
+
C3L-01281 1779 0 876 1
|
42 |
+
C3L-01283 735 0 735 0
|
43 |
+
C3L-01286 1028 1 594 1
|
44 |
+
C3L-01287 633 1 630 0
|
45 |
+
C3L-01288 1800 0 1416 1
|
46 |
+
C3L-01302 55 1 53 0
|
47 |
+
C3L-01313 1229 1 456 1
|
48 |
+
C3L-01352 233 0 233 0
|
49 |
+
C3L-01553 384 0 384 0
|
50 |
+
C3L-01557 329 0 329 0
|
51 |
+
C3L-01560 250 0 250 0
|
52 |
+
C3L-01603 1765 0 1765 0
|
53 |
+
C3L-01607 1794 0 1794 0
|
54 |
+
C3L-01836 1122 0 1122 0
|
55 |
+
C3L-01861 1761 0 1761 0
|
56 |
+
C3L-01882 350 0 350 0
|
57 |
+
C3L-01885 342 0 342 0
|
58 |
+
C3N-00148 NA 0 NA 0
|
59 |
+
C3N-00149 NA 0 NA 0
|
60 |
+
C3N-00150 NA 0 NA 0
|
61 |
+
C3N-00154 NA 0 NA 0
|
62 |
+
C3N-00168 826 0 826 0
|
63 |
+
C3N-00177 841 0 841 0
|
64 |
+
C3N-00194 208 0 115 1
|
65 |
+
C3N-00242 1793 0 1793 0
|
66 |
+
C3N-00244 728 0 525 1
|
67 |
+
C3N-00246 2006 0 1890 1
|
68 |
+
C3N-00305 1913 0 199 1
|
69 |
+
C3N-00310 1623 1 1623 0
|
70 |
+
C3N-00312 1888 0 236 1
|
71 |
+
C3N-00314 126 1 NA 1
|
72 |
+
C3N-00315 1861 0 1861 0
|
73 |
+
C3N-00317 1133 0 1133 0
|
74 |
+
C3N-00320 1849 0 1849 0
|
75 |
+
C3N-00380 662 0 662 0
|
76 |
+
C3N-00390 687 0 687 0
|
77 |
+
C3N-00437 1637 1 1637 0
|
78 |
+
C3N-00491 99 1 77 0
|
79 |
+
C3N-00494 1786 0 1786 0
|
80 |
+
C3N-00495 1779 0 1779 0
|
81 |
+
C3N-00573 NA 0 NA 0
|
82 |
+
C3N-00577 397 0 397 0
|
83 |
+
C3N-00646 NA 0 NA 0
|
84 |
+
C3N-00733 1464 0 1464 0
|
85 |
+
C3N-00831 452 1 35 1
|
86 |
+
C3N-00834 1755 0 1755 0
|
87 |
+
C3N-00852 620 0 620 0
|
88 |
+
C3N-00953 1785 0 1785 0
|
89 |
+
C3N-01176 1710 0 1710 0
|
90 |
+
C3N-01178 1703 0 1703 0
|
91 |
+
C3N-01179 1816 0 1816 0
|
92 |
+
C3N-01200 47 1 47 0
|
93 |
+
C3N-01213 654 0 654 0
|
94 |
+
C3N-01214 653 0 653 0
|
95 |
+
C3N-01220 633 1 633 0
|
96 |
+
C3N-01261 680 0 680 0
|
97 |
+
C3N-01361 1811 0 1811 0
|
98 |
+
C3N-01522 692 0 692 0
|
99 |
+
C3N-01524 694 0 694 0
|
100 |
+
C3N-01646 1470 0 1470 0
|
101 |
+
C3N-01648 1417 0 1417 0
|
102 |
+
C3N-01649 1421 0 1421 0
|
103 |
+
C3N-01651 1420 0 354 1
|
104 |
+
C3N-01808 778 0 778 0
|
CPTAC/COAD/COAD_Normal_CaseList.txt
ADDED
@@ -0,0 +1,100 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
01CO001
|
2 |
+
01CO005
|
3 |
+
01CO006
|
4 |
+
01CO008
|
5 |
+
01CO013
|
6 |
+
01CO014
|
7 |
+
01CO015
|
8 |
+
01CO019
|
9 |
+
01CO022
|
10 |
+
05CO002
|
11 |
+
05CO003
|
12 |
+
05CO006
|
13 |
+
05CO007
|
14 |
+
05CO011
|
15 |
+
05CO015
|
16 |
+
05CO020
|
17 |
+
05CO026
|
18 |
+
05CO028
|
19 |
+
05CO029
|
20 |
+
05CO032
|
21 |
+
05CO033
|
22 |
+
05CO034
|
23 |
+
05CO035
|
24 |
+
05CO037
|
25 |
+
05CO039
|
26 |
+
05CO041
|
27 |
+
05CO044
|
28 |
+
05CO045
|
29 |
+
05CO047
|
30 |
+
05CO048
|
31 |
+
05CO049
|
32 |
+
05CO050
|
33 |
+
05CO053
|
34 |
+
05CO054
|
35 |
+
06CO001
|
36 |
+
06CO002
|
37 |
+
09CO005
|
38 |
+
09CO006
|
39 |
+
09CO008
|
40 |
+
09CO011
|
41 |
+
09CO013
|
42 |
+
09CO014
|
43 |
+
09CO015
|
44 |
+
09CO018
|
45 |
+
09CO019
|
46 |
+
09CO022
|
47 |
+
11CO005
|
48 |
+
11CO007
|
49 |
+
11CO008
|
50 |
+
11CO010
|
51 |
+
11CO018
|
52 |
+
11CO019
|
53 |
+
11CO020
|
54 |
+
11CO021
|
55 |
+
11CO022
|
56 |
+
11CO027
|
57 |
+
11CO030
|
58 |
+
11CO031
|
59 |
+
11CO032
|
60 |
+
11CO033
|
61 |
+
11CO036
|
62 |
+
11CO037
|
63 |
+
11CO039
|
64 |
+
11CO042
|
65 |
+
11CO043
|
66 |
+
11CO044
|
67 |
+
11CO045
|
68 |
+
11CO047
|
69 |
+
11CO048
|
70 |
+
11CO051
|
71 |
+
11CO052
|
72 |
+
11CO053
|
73 |
+
11CO054
|
74 |
+
11CO057
|
75 |
+
11CO058
|
76 |
+
11CO060
|
77 |
+
11CO061
|
78 |
+
11CO062
|
79 |
+
11CO070
|
80 |
+
11CO072
|
81 |
+
11CO077
|
82 |
+
11CO079
|
83 |
+
14CO002
|
84 |
+
14CO005
|
85 |
+
15CO001
|
86 |
+
15CO002
|
87 |
+
16CO002
|
88 |
+
16CO003
|
89 |
+
16CO006
|
90 |
+
16CO011
|
91 |
+
20CO001
|
92 |
+
20CO003
|
93 |
+
20CO004
|
94 |
+
20CO006
|
95 |
+
20CO007
|
96 |
+
21CO006
|
97 |
+
21CO007
|
98 |
+
22CO004
|
99 |
+
22CO006
|
100 |
+
27CO004
|
CPTAC/COAD/COAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:e7c5108dcea2aa615b0c1288d7a8b43bdc1c2469f1a9543a4078f7ee048ef253
|
3 |
+
size 28863817
|
CPTAC/COAD/COAD_RNAseq_gene_fusion_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/COAD/COAD_RNAseq_isoform_FPKM_log2_Tumor.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:55807f4bc7c63e4fbd4aad9ebb859d2d7eca11916cb395c771760d46a0033679
|
3 |
+
size 40504534
|
CPTAC/COAD/COAD_Tumor_CaseList.txt
ADDED
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
01CO001
|
2 |
+
01CO005
|
3 |
+
01CO006
|
4 |
+
01CO008
|
5 |
+
01CO013
|
6 |
+
01CO014
|
7 |
+
01CO015
|
8 |
+
01CO019
|
9 |
+
01CO022
|
10 |
+
05CO002
|
11 |
+
05CO003
|
12 |
+
05CO004
|
13 |
+
05CO005
|
14 |
+
05CO006
|
15 |
+
05CO007
|
16 |
+
05CO011
|
17 |
+
05CO014
|
18 |
+
05CO015
|
19 |
+
05CO020
|
20 |
+
05CO026
|
21 |
+
05CO028
|
22 |
+
05CO029
|
23 |
+
05CO032
|
24 |
+
05CO033
|
25 |
+
05CO034
|
26 |
+
05CO035
|
27 |
+
05CO037
|
28 |
+
05CO039
|
29 |
+
05CO041
|
30 |
+
05CO044
|
31 |
+
05CO045
|
32 |
+
05CO047
|
33 |
+
05CO048
|
34 |
+
05CO049
|
35 |
+
05CO050
|
36 |
+
05CO053
|
37 |
+
05CO054
|
38 |
+
05CO055
|
39 |
+
06CO001
|
40 |
+
06CO002
|
41 |
+
09CO005
|
42 |
+
09CO006
|
43 |
+
09CO008
|
44 |
+
09CO011
|
45 |
+
09CO013
|
46 |
+
09CO014
|
47 |
+
09CO015
|
48 |
+
09CO018
|
49 |
+
09CO019
|
50 |
+
09CO022
|
51 |
+
11CO005
|
52 |
+
11CO007
|
53 |
+
11CO008
|
54 |
+
11CO010
|
55 |
+
11CO018
|
56 |
+
11CO019
|
57 |
+
11CO020
|
58 |
+
11CO021
|
59 |
+
11CO022
|
60 |
+
11CO027
|
61 |
+
11CO030
|
62 |
+
11CO031
|
63 |
+
11CO032
|
64 |
+
11CO033
|
65 |
+
11CO036
|
66 |
+
11CO037
|
67 |
+
11CO039
|
68 |
+
11CO042
|
69 |
+
11CO043
|
70 |
+
11CO044
|
71 |
+
11CO045
|
72 |
+
11CO047
|
73 |
+
11CO048
|
74 |
+
11CO051
|
75 |
+
11CO052
|
76 |
+
11CO053
|
77 |
+
11CO054
|
78 |
+
11CO057
|
79 |
+
11CO058
|
80 |
+
11CO059
|
81 |
+
11CO060
|
82 |
+
11CO061
|
83 |
+
11CO062
|
84 |
+
11CO070
|
85 |
+
11CO072
|
86 |
+
11CO077
|
87 |
+
11CO079
|
88 |
+
13CO001
|
89 |
+
14CO001
|
90 |
+
14CO002
|
91 |
+
14CO003
|
92 |
+
14CO005
|
93 |
+
15CO001
|
94 |
+
15CO002
|
95 |
+
16CO002
|
96 |
+
16CO003
|
97 |
+
16CO006
|
98 |
+
16CO011
|
99 |
+
16CO012
|
100 |
+
20CO001
|
101 |
+
20CO003
|
102 |
+
20CO004
|
103 |
+
20CO006
|
104 |
+
20CO007
|
105 |
+
21CO006
|
106 |
+
21CO007
|
107 |
+
22CO004
|
108 |
+
22CO006
|
109 |
+
24CO005
|
110 |
+
27CO004
|
CPTAC/COAD/COAD_WES_CNV_gene_gistic_level.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:a1e0a457efb696fb1a1f913b0cbcfe6aa4f2377b72e95f2ac7a86c2daa91b350
|
3 |
+
size 14310917
|
CPTAC/COAD/COAD_WES_CNV_gene_ratio_log2.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ff2e117d222871641864bde5e4a08d0e5f3b0340ab7b381ab3ca8bfb2d3a8981
|
3 |
+
size 42766670
|
CPTAC/COAD/COAD_meta.txt
ADDED
@@ -0,0 +1,111 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
case_id Age Sex Tumor_Size_cm Histologic_Grade Tumor_necrosis Path_Stage_pT Path_Stage_pN Stage BMI Tobacco_smoking_history CASP8_mutation FAT1_mutation RNF43_mutation RPL22_mutation ARID1A_mutation PIK3CA_mutation ACVR2A_mutation SOX9_mutation KRAS_mutation APC_mutation SETD1B_mutation TP53_mutation SMAD4_mutation NOTCH1_mutation TCF7L2_mutation ZFP36L2_mutation ANO10_mutation MXRA8_mutation B2M_mutation CTNNB1_mutation UPF3A_mutation ZNF540_mutation BMPR2_mutation PTX4_mutation
|
2 |
+
data_type CON BIN CON ORD BIN ORD ORD ORD CON ORD BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN BIN
|
3 |
+
01CO001 60 Male NA NA NA pT4 pN2 Stage III NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
4 |
+
01CO005 69 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0
|
5 |
+
01CO006 75 Female NA NA NA pT4 pN2 Stage III NA NA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
6 |
+
01CO008 54 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
|
7 |
+
01CO013 57 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0
|
8 |
+
01CO014 77 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0
|
9 |
+
01CO015 88 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
10 |
+
01CO019 63 Female NA NA NA pT4 pN2 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0
|
11 |
+
01CO022 76 Female NA NA NA pT2 pN0 Stage I NA NA 0 1 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1
|
12 |
+
05CO002 NA Female NA NA NA pT2 pN1 Stage III NA NA 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0
|
13 |
+
05CO003 NA Male NA NA NA pT3 pN0 Stage II NA NA 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1
|
14 |
+
05CO005 62 Male NA NA NA pT2 pN0 Stage I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
15 |
+
05CO006 83 Female NA NA NA pT3 pN1 Stage III NA NA 1 0 1 1 1 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0
|
16 |
+
05CO007 85 Female NA NA NA pT4 pN2 Stage III NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
17 |
+
05CO011 39 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
18 |
+
05CO015 73 Female NA NA NA pT3 pN0 Stage II NA NA 1 0 1 0 1 0 1 0 0 1 0 0 0 0 0 1 1 1 1 0 1 0 1 0
|
19 |
+
05CO020 90 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
20 |
+
05CO026 70 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
21 |
+
05CO028 61 Female NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
22 |
+
05CO029 55 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
23 |
+
05CO032 79 Male NA NA NA pT3 pN1 Stage III NA NA 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 1 1 0 1 1 1 0
|
24 |
+
05CO033 61 Male NA NA NA pT2 pN2 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0
|
25 |
+
05CO034 54 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0
|
26 |
+
05CO035 64 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
27 |
+
05CO037 50 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 1 0 0 1 1 0 1 1 0 1 1 0 1 0 1 0 0 0 1 1 1
|
28 |
+
05CO039 73 Male NA NA NA pT4 pN0 Stage II NA NA 1 1 1 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 1 0
|
29 |
+
05CO041 78 Female NA NA NA pT3 pN0 Stage II NA NA 1 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 1 0
|
30 |
+
05CO044 70 Female NA NA NA pT4 pN0 Stage II NA NA 1 1 1 1 0 1 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 1 1
|
31 |
+
05CO045 75 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0
|
32 |
+
05CO047 56 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0
|
33 |
+
05CO048 78 Female NA NA NA pT4 pN2 Stage III NA NA 1 0 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0
|
34 |
+
05CO049 87 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0
|
35 |
+
05CO050 66 Female NA NA NA pT3 pN1 Stage III NA NA 0 1 1 1 1 1 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0
|
36 |
+
05CO053 51 Male NA NA NA pT3 pN1 Stage II NA NA 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
37 |
+
05CO054 86 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1
|
38 |
+
05CO055 53 Female NA NA NA pT4 pN2 Stage III NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
39 |
+
06CO001 75 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0
|
40 |
+
06CO002 73 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
41 |
+
09CO005 69 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0
|
42 |
+
09CO006 86 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
|
43 |
+
09CO008 53 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
44 |
+
09CO011 75 Female NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0
|
45 |
+
09CO013 50 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1
|
46 |
+
09CO014 66 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
47 |
+
09CO015 68 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
48 |
+
09CO018 52 Female NA NA NA pT2 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
49 |
+
09CO019 87 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0
|
50 |
+
09CO022 71 Female NA NA NA pT4 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
51 |
+
11CO005 66 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0
|
52 |
+
11CO007 64 Female NA NA NA pT3 pN0 Stage II NA NA 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0
|
53 |
+
11CO008 67 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
54 |
+
11CO010 59 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
55 |
+
11CO018 74 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 1 0 1 1 1 1 0 1 1 0 0 1 0 1 1 0 0 1 1 0 1 1
|
56 |
+
11CO019 74 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0
|
57 |
+
11CO020 55 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
58 |
+
11CO021 74 Female NA NA NA pT3 pN2 Stage IV NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
59 |
+
11CO022 72 Male NA NA NA pT4 pN0 Stage IV NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
60 |
+
11CO027 55 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
61 |
+
11CO030 54 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
|
62 |
+
11CO031 53 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0
|
63 |
+
11CO032 57 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0
|
64 |
+
11CO033 54 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 1
|
65 |
+
11CO036 36 Male NA NA NA pT3 pN1 Stage III NA NA 1 1 0 0 0 1 1 0 0 1 1 1 0 0 1 0 1 1 0 0 0 0 0 0
|
66 |
+
11CO037 52 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
|
67 |
+
11CO039 67 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
68 |
+
11CO042 70 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0
|
69 |
+
11CO043 67 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0
|
70 |
+
11CO044 69 Female NA NA NA pT3 pN1 Stage IV NA NA 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0
|
71 |
+
11CO045 71 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
72 |
+
11CO047 65 Male NA NA NA pT3 pN0 Stage II NA NA 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
73 |
+
11CO048 64 Male NA NA NA pT3 pN0 Stage II NA NA 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
74 |
+
11CO051 61 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 1 0 1 0 1 0 1 1
|
75 |
+
11CO052 66 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0
|
76 |
+
11CO053 63 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
77 |
+
11CO054 65 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
78 |
+
11CO057 73 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0
|
79 |
+
11CO058 56 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
80 |
+
11CO059 83 Female NA NA NA pT3 pN0 Stage II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
81 |
+
11CO060 71 Female NA NA NA pT3 pN0 Stage II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
82 |
+
11CO061 47 Female NA NA NA pT3 pN0 Stage II NA NA 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
|
83 |
+
11CO062 74 Male NA NA NA pT3 pN0 Stage IV NA NA 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
|
84 |
+
11CO070 35 Male NA NA NA pT3 pN1 Stage III NA NA 1 1 0 1 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 1 1 1
|
85 |
+
11CO072 64 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0
|
86 |
+
11CO077 67 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
87 |
+
11CO079 75 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
88 |
+
14CO002 62 Male NA NA NA pT3 pN0 Stage II NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
89 |
+
14CO003 74 Female NA NA NA pT3 pN2 Stage III NA NA 1 1 0 1 1 0 1 1 0 0 1 0 0 1 1 0 1 1 1 1 0 0 0 0
|
90 |
+
14CO005 75 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
91 |
+
15CO001 57 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
92 |
+
15CO002 53 Female NA NA NA pT4 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0
|
93 |
+
16CO002 67 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
|
94 |
+
16CO003 63 Female NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0
|
95 |
+
16CO006 64 Male NA NA NA pT3 pN0 Stage IV NA NA 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0
|
96 |
+
16CO011 59 Male NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
97 |
+
16CO012 74 Female NA NA NA pT2 pN0 Stage I NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
98 |
+
20CO001 53 Female NA NA NA pT3 pN1 Stage III NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
99 |
+
20CO003 60 Male NA NA NA pT4 pN1 Stage IV NA NA 0 1 0 0 1 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0
|
100 |
+
20CO004 55 Male NA NA NA pT4 pN2 Stage III NA NA 0 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0
|
101 |
+
20CO006 58 Male NA NA NA pT3 pN1 Stage IV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
102 |
+
20CO007 54 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0
|
103 |
+
21CO006 76 Male NA NA NA pT2 pN0 Stage I NA NA 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
104 |
+
21CO007 50 Male NA NA NA pT4 pN2 Stage IV NA NA 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
105 |
+
22CO004 51 Male NA NA NA pT3 pN0 Stage II NA NA 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
|
106 |
+
22CO006 57 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 0
|
107 |
+
24CO005 41 Female NA NA NA pT2 pN1 Stage III NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
108 |
+
27CO004 50 Female NA NA NA pT3 pN2 Stage III NA NA 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0
|
109 |
+
05CO004 40 Female NA NA NA pT3 pN1 Stage III NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
110 |
+
13CO001 70 Male NA NA NA pT3 pN1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
111 |
+
14CO001 49 Female NA NA NA pT3 pN1 Stage III NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
|
CPTAC/COAD/COAD_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/COAD/COAD_phenotype.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
CPTAC/COAD/COAD_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:84bddc6e7ac01c7e240959a23a104684cabe4a98b9062fd6f5811cfe98083451
|
3 |
+
size 31131857
|