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  1. .gitattributes +77 -0
  2. CPTAC/BRCA/BRCA_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt +3 -0
  3. CPTAC/BRCA/BRCA_RNAseq_gene_fusion_Tumor.txt +0 -0
  4. CPTAC/BRCA/BRCA_RNAseq_isoform_FPKM_log2_Tumor.txt +3 -0
  5. CPTAC/BRCA/BRCA_Tumor_CaseList.txt +122 -0
  6. CPTAC/BRCA/BRCA_WES_CNV_gene_gistic_level.txt +3 -0
  7. CPTAC/BRCA/BRCA_WES_CNV_gene_ratio_log2.txt +3 -0
  8. CPTAC/BRCA/BRCA_meta.txt +124 -0
  9. CPTAC/BRCA/BRCA_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt +0 -0
  10. CPTAC/BRCA/BRCA_phenotype.txt +0 -0
  11. CPTAC/BRCA/BRCA_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
  12. CPTAC/BRCA/BRCA_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
  13. CPTAC/BRCA/BRCA_somatic_mutation.maf +3 -0
  14. CPTAC/BRCA/BRCA_somatic_mutation_gene_level_binary.txt +0 -0
  15. CPTAC/BRCA/BRCA_survival.txt +123 -0
  16. CPTAC/CCRCC/CCRCC_Normal_CaseList.txt +80 -0
  17. CPTAC/CCRCC/CCRCC_RNAseq_circRNA_RSEM_UQ_log2_Normal.txt +0 -0
  18. CPTAC/CCRCC/CCRCC_RNAseq_circRNA_RSEM_UQ_log2_Tumor.txt +0 -0
  19. CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Normal.txt +3 -0
  20. CPTAC/CCRCC/CCRCC_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt +3 -0
  21. CPTAC/CCRCC/CCRCC_RNAseq_gene_fusion_Tumor.txt +0 -0
  22. CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Normal.txt +3 -0
  23. CPTAC/CCRCC/CCRCC_RNAseq_isoform_FPKM_log2_Tumor.txt +3 -0
  24. CPTAC/CCRCC/CCRCC_Tumor_CaseList.txt +103 -0
  25. CPTAC/CCRCC/CCRCC_WES_CNV_gene_gistic_level.txt +3 -0
  26. CPTAC/CCRCC/CCRCC_WES_CNV_gene_ratio_log2.txt +3 -0
  27. CPTAC/CCRCC/CCRCC_meta.txt +105 -0
  28. CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Normal.txt +0 -0
  29. CPTAC/CCRCC/CCRCC_methylation_gene_beta_value_Tumor.txt +3 -0
  30. CPTAC/CCRCC/CCRCC_miRNAseq_mature_miRNA_RPM_log2_Normal.txt +0 -0
  31. CPTAC/CCRCC/CCRCC_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt +0 -0
  32. CPTAC/CCRCC/CCRCC_phenotype.txt +0 -0
  33. CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt +3 -0
  34. CPTAC/CCRCC/CCRCC_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
  35. CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Normal.txt +3 -0
  36. CPTAC/CCRCC/CCRCC_proteomics_gene_abundance_log2_reference_intensity_normalized_Tumor.txt +3 -0
  37. CPTAC/CCRCC/CCRCC_somatic_mutation.maf +0 -0
  38. CPTAC/CCRCC/CCRCC_somatic_mutation_gene_level_binary.txt +0 -0
  39. CPTAC/CCRCC/CCRCC_survival.txt +104 -0
  40. CPTAC/COAD/COAD_Normal_CaseList.txt +100 -0
  41. CPTAC/COAD/COAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt +3 -0
  42. CPTAC/COAD/COAD_RNAseq_gene_fusion_Tumor.txt +0 -0
  43. CPTAC/COAD/COAD_RNAseq_isoform_FPKM_log2_Tumor.txt +3 -0
  44. CPTAC/COAD/COAD_Tumor_CaseList.txt +110 -0
  45. CPTAC/COAD/COAD_WES_CNV_gene_gistic_level.txt +3 -0
  46. CPTAC/COAD/COAD_WES_CNV_gene_ratio_log2.txt +3 -0
  47. CPTAC/COAD/COAD_meta.txt +111 -0
  48. CPTAC/COAD/COAD_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt +0 -0
  49. CPTAC/COAD/COAD_phenotype.txt +0 -0
  50. CPTAC/COAD/COAD_phospho_site_abundance_log2_reference_intensity_normalized_Normal.txt +3 -0
.gitattributes CHANGED
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+ CPTAC/COAD/COAD_RNAseq_gene_RSEM_coding_UQ_1500_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
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+ CPTAC/COAD/COAD_RNAseq_isoform_FPKM_log2_Tumor.txt filter=lfs diff=lfs merge=lfs -text
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+ CPTAC/COAD/COAD_WES_CNV_gene_ratio_log2.txt filter=lfs diff=lfs merge=lfs -text
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+ CPTAC/GBM/GBM_phospho_site_abundance_log2_reference_intensity_normalized_Tumor.txt filter=lfs diff=lfs merge=lfs -text
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+ CPTAC/HNSCC/HNSCC_methylation_gene_beta_value_Tumor.txt filter=lfs diff=lfs merge=lfs -text
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+ case_id Age Sex Tumor_Size_cm Histologic_Grade Tumor_necrosis Path_Stage_pT Path_Stage_pN Stage BMI Tobacco_smoking_history MAP3K1_mutation GATA3_mutation PIK3CA_mutation TP53_mutation
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+ case_id Age Sex Tumor_Size_cm Histologic_Grade Tumor_necrosis Path_Stage_pT Path_Stage_pN Stage BMI Tobacco_smoking_history KDM5C_mutation VHL_mutation BAP1_mutation PBRM1_mutation SETD2_mutation
2
+ data_type CON BIN CON ORD BIN ORD ORD ORD CON ORD BIN BIN BIN BIN BIN
3
+ C3L-00908 60 Female 10.5 G3 Poorly differentiated Not identified pT2 NA Stage II 27.85 past smoker 0 1 1 1 0
4
+ C3L-00004 72 Male 12 G3 Poorly differentiated Present pT3 NA Stage III 22.8 past smoker 0 1 0 1 1
5
+ C3L-00010 30 Male 6.5 G3 Poorly differentiated Not identified pT1 pN0 Stage I 34.15 current smoker 1 1 0 0 0
6
+ C3L-00011 63 Female 12 G4 Undifferentiated Present pT3 NA Stage IV 27.47 non-smoker 1 1 1 0 0
7
+ C3L-00026 65 Female 2 G3 Poorly differentiated Not identified pT1 NA Stage I 28.23 non-smoker 0 1 0 0 0
8
+ C3L-00079 49 Male 14 G3 Poorly differentiated Present pT3 pN1 Stage III 37.88 non-smoker 1 1 0 1 0
9
+ C3L-00088 72 Male 4 G2 Moderately differentiated Not identified pT3 NA Stage III 32.82 past smoker 0 1 0 0 0
10
+ C3L-00096 52 Male 12.3 G4 Undifferentiated Present pT3 pN0 Stage IV 27.44 non-smoker 0 1 0 0 0
11
+ C3L-00097 59 Male 3.7 G2 Moderately differentiated Not identified pT1 NA Stage I 36.81 past smoker 1 1 0 0 0
12
+ C3L-00103 56 Male 11 G3 Poorly differentiated Present pT3 pN0 Stage III 28.7 current smoker 0 1 0 0 0
13
+ C3L-00183 33 Female 6 G2 Moderately differentiated Present pT3 NA Stage III 36.39 current smoker 0 0 0 1 0
14
+ C3L-00360 72 Male 3.7 G3 Poorly differentiated Not identified pT2 NA Stage II 38.94 past smoker 0 1 0 0 0
15
+ C3L-00369 89 Male 12.5 G2 Moderately differentiated Present pT3 NA Stage III 27.35 non-smoker 0 1 0 1 0
16
+ C3L-00416 62 Male 6 G4 Undifferentiated Present pT3 NA Stage III 32 current smoker 0 0 1 1 1
17
+ C3L-00418 56 Female 8.7 G2 Moderately differentiated Not identified pT3 NA Stage III 59.88 NA 0 0 0 1 0
18
+ C3L-00447 35 Male 5.5 G3 Poorly differentiated Not identified pT1 NA Stage I 36.57 current smoker 0 1 0 0 0
19
+ C3L-00448 66 Male 1.5 G2 Moderately differentiated Not identified pT1 NA Stage I 26.18 past smoker 0 1 0 0 0
20
+ C3L-00561 50 Male 10 G4 Undifferentiated Present pT3 pN0 Stage III 27.47 non-smoker 0 1 0 0 0
21
+ C3L-00581 52 Male 13 G2 Moderately differentiated Not identified pT2 NA Stage II 33.66 non-smoker 0 1 1 0 0
22
+ C3L-00583 55 Male 4 G3 Poorly differentiated Not identified pT1 NA Stage I 37.72 non-smoker 1 1 0 1 0
23
+ C3L-00606 75 Female 7 G3 Poorly differentiated Not identified pT3 pN0 Stage III 42.33 past smoker 0 1 0 1 0
24
+ C3L-00607 66 Male 7.5 G3 Poorly differentiated Not identified pT3 NA Stage III 37.96 non-smoker 0 0 0 0 0
25
+ C3L-00610 57 Female 6.5 G3 Poorly differentiated Not identified pT1 NA Stage I 40.74 non-smoker 0 1 0 1 0
26
+ C3L-00765 61 Female 5.6 G2 Moderately differentiated Not identified pT1 NA Stage I 21.96 past smoker 0 0 0 0 0
27
+ C3L-00766 57 Female 2.8 G2 Moderately differentiated Not identified pT1 NA Stage I 68.59 NA 0 0 0 0 0
28
+ C3L-00790 44 Male 7 G2 Moderately differentiated Present pT1 NA Stage I 38.99 non-smoker 0 1 0 1 1
29
+ C3L-00791 76 Male 6.5 G3 Poorly differentiated Not identified pT1 pN1 Stage III 29.49 NA 0 1 0 1 1
30
+ C3L-00792 90 Female 8.7 G3 Poorly differentiated Not identified pT2 NA Stage II 29.6 non-smoker 0 1 1 0 0
31
+ C3L-00796 67 Male 5.5 G2 Moderately differentiated Present pT1 NA Stage I 30.81 current smoker 0 0 1 0 0
32
+ C3L-00799 41 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 35.66 NA 0 1 0 1 0
33
+ C3L-00800 41 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 29.01 NA 0 1 0 0 0
34
+ C3L-00812 74 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 27.04 NA 0 1 0 1 0
35
+ C3L-00813 61 Male 4 G3 Poorly differentiated Not identified pT3 NA Stage III 19.49 non-smoker 0 1 1 0 0
36
+ C3L-00814 83 Male 3 G2 Moderately differentiated Not identified pT1 NA Stage I 30.56 NA 0 1 0 1 1
37
+ C3L-00817 80 Male 1.2 G2 Moderately differentiated Not identified pT1 NA Stage I 33.96 NA 0 1 0 0 0
38
+ C3L-00902 69 Female 5 G1 Well differentiated Not identified pT1 NA Stage I 19.72 past smoker 0 1 0 0 0
39
+ C3L-00907 55 Male 4.8 G2 Moderately differentiated Not identified pT1 NA Stage I 47.25 past smoker 1 1 0 1 0
40
+ C3L-00910 75 Female 5 G3 Poorly differentiated Not identified pT1 NA Stage I 36.36 past smoker 0 1 0 1 0
41
+ C3L-00917 37 Male 3 G3 Poorly differentiated Not identified pT1 NA Stage I 45.37 NA 0 1 0 0 0
42
+ C3L-01281 66 Male 11.5 G4 Undifferentiated Not identified pT3 NA Stage IV 34.76 past smoker 0 1 0 1 0
43
+ C3L-01283 37 Male 2.4 G3 Poorly differentiated Not identified pT1 NA Stage I 30.86 non-smoker 0 1 0 0 0
44
+ C3L-01286 58 Male 6 G3 Poorly differentiated Present pT3 NA Stage III 46.17 non-smoker 0 0 0 1 1
45
+ C3L-01287 60 Male 10.5 G4 Undifferentiated Present pT3 NA Stage IV 25.31 non-smoker 0 1 1 0 0
46
+ C3L-01288 70 Female 2.8 G1 Well differentiated Not identified pT1 NA Stage I 39.45 current smoker 0 1 0 0 0
47
+ C3L-01302 71 Female 8.5 G4 Undifferentiated Present pT3 pN0 Stage III 36 non-smoker 0 0 0 1 0
48
+ C3L-01313 63 Male 9 G4 Undifferentiated Not identified pT3 NA Stage III 29.38 past smoker 0 1 1 0 0
49
+ C3L-01352 76 Female 3.4 G2 Moderately differentiated Present pT1 NA Stage I 26.95 non-smoker 0 0 0 0 1
50
+ C3L-01553 59 Male 1.9 G2 Moderately differentiated Not identified pT1 NA Stage I 46.17 NA 1 1 0 0 0
51
+ C3L-01557 51 Male 9.6 G3 Poorly differentiated Present pT3 pN0 Stage III 48.46 NA 0 1 0 1 0
52
+ C3L-01560 54 Female 1.5 G3 Poorly differentiated Not identified pT1 NA Stage I 38.08 NA 0 1 0 0 0
53
+ C3L-01603 63 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 42.77 past smoker 0 1 0 0 0
54
+ C3L-01607 83 Male 6.5 G3 Poorly differentiated Not identified pT3 NA Stage III 27.52 non-smoker 1 1 0 1 0
55
+ C3L-01836 47 Male 4.5 G3 Poorly differentiated Not identified pT1 NA Stage I 29.41 past smoker 0 1 0 1 0
56
+ C3L-01861 57 Male 3.5 G3 Poorly differentiated Not identified pT1 NA Stage I 28.63 past smoker 0 1 0 1 0
57
+ C3L-01882 48 Male 2.2 G2 Moderately differentiated Not identified pT1 pN0 Stage I 48.79 current smoker 0 0 0 0 0
58
+ C3L-01885 67 Male 3.5 G2 Moderately differentiated Not identified pT1 NA Stage I 35.27 past smoker 0 1 0 1 0
59
+ C3N-00148 52 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 28.41 NA 0 1 0 1 0
60
+ C3N-00149 68 Female 12 G3 Poorly differentiated Present pT4 pN0 Stage IV 27.05 NA 0 1 1 0 0
61
+ C3N-00150 55 Female 12 G3 Poorly differentiated Present pT3 pN0 Stage IV 18.42 NA 0 0 0 0 0
62
+ C3N-00154 68 Male 8 G3 Poorly differentiated Present pT2 pN0 Stage II 28.08 NA 0 1 0 1 0
63
+ C3N-00168 47 Male 4 G3 Poorly differentiated Not identified pT1 pN0 Stage I 18.78 current smoker 0 1 0 1 0
64
+ C3N-00177 52 Male 7 G2 Moderately differentiated Not identified pT3 pN0 Stage III 24.06 non-smoker 0 1 0 0 0
65
+ C3N-00194 51 Female 12 G3 Poorly differentiated Present pT2 NA Stage IV 26.96 current smoker 0 1 0 0 0
66
+ C3N-00242 69 Male 3.5 G2 Moderately differentiated Not identified pT1 NA Stage I 39.2 past smoker 1 1 0 1 0
67
+ C3N-00244 46 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 44.3 non-smoker 0 1 0 1 0
68
+ C3N-00246 44 Male 3.1 G2 Moderately differentiated Present pT1 NA Stage I 45.77 non-smoker 1 1 0 0 0
69
+ C3N-00305 60 Female 1 G1 Well differentiated Not identified pT1 NA Stage I 19 current smoker 0 1 0 1 0
70
+ C3N-00310 84 Male 5.5 G2 Moderately differentiated Not identified pT3 NA Stage III 28 past smoker 1 1 0 1 0
71
+ C3N-00312 68 Male 4 G3 Poorly differentiated Not identified pT3 NA Stage III 30 NA 0 1 0 1 0
72
+ C3N-00314 78 Male 4.5 G2 Moderately differentiated Not identified pT1 NA Stage I 31 past smoker 1 0 0 1 1
73
+ C3N-00315 68 Male 7 G3 Poorly differentiated Not identified pT1 NA Stage I 28 non-smoker 0 1 0 0 0
74
+ C3N-00317 74 Female 5.5 G2 Moderately differentiated Not identified pT1 NA Stage I 23 non-smoker 0 1 1 0 0
75
+ C3N-00320 67 Male 4 G2 Moderately differentiated Not identified pT3 NA Stage III 32 past smoker 0 1 0 1 0
76
+ C3N-00380 57 Female 4.1 G2 Moderately differentiated Not identified pT1 NA Stage I 46 non-smoker 0 1 0 1 0
77
+ C3N-00390 58 Male 14.1 G2 Moderately differentiated Not identified pT3 NA Stage IV 29.05 non-smoker 0 1 0 0 0
78
+ C3N-00437 69 Female 6 G3 Poorly differentiated Not identified pT3 NA Stage III 37 past smoker 0 1 1 0 1
79
+ C3N-00491 54 Male 6.5 G2 Moderately differentiated Not identified pT1 NA Stage IV 30 non-smoker 0 1 0 1 1
80
+ C3N-00494 66 Male 5.5 G2 Moderately differentiated Not identified pT1 NA Stage I 34 current smoker 0 1 0 1 0
81
+ C3N-00495 67 Male 4 G2 Moderately differentiated Not identified pT1 NA Stage I 16 past smoker 1 1 0 0 0
82
+ C3N-00573 61 Male 11 G2 Moderately differentiated Not identified pT2 pN0 Stage II 22.04 non-smoker 0 1 0 0 0
83
+ C3N-00577 72 Male 14 G3 Poorly differentiated Not identified pT3 pN1 Stage IV 21.83 non-smoker 0 0 0 1 0
84
+ C3N-00646 57 Female 3.2 G2 Moderately differentiated Not identified pT1 NA Stage I 27.72 NA 0 0 1 0 0
85
+ C3N-00733 56 Male 8.6 G2 Moderately differentiated Present pT3 NA Stage III 27.77 non-smoker 0 1 0 1 0
86
+ C3N-00831 52 Male 8 G2 Moderately differentiated Not identified pT2 NA Stage II 30 NA 0 0 0 0 0
87
+ C3N-00834 65 Male 5 G1 Well differentiated Not identified pT1 NA Stage I 30 past smoker 0 1 0 0 0
88
+ C3N-00852 62 Male 13.6 G3 Poorly differentiated Not identified pT3 NA Stage III 28.71 non-smoker 1 1 0 1 0
89
+ C3N-00953 41 Male 8 G3 Poorly differentiated Present pT2 NA Stage II 22.43 non-smoker 0 1 1 0 0
90
+ C3N-01176 71 Male 6.5 G2 Moderately differentiated Not identified pT3 NA Stage III 29 non-smoker 0 1 0 0 0
91
+ C3N-01178 58 Female 7 G2 Moderately differentiated Not identified pT3 NA Stage III 25 past smoker 0 1 0 0 0
92
+ C3N-01179 72 Male 2.5 G2 Moderately differentiated Not identified pT3 NA Stage III 26 past smoker 0 1 0 1 0
93
+ C3N-01200 56 Female 16 G3 Poorly differentiated Present pT4 pN0 Stage IV 26.37 non-smoker 0 1 1 0 0
94
+ C3N-01213 68 Male 8.3 G1 Well differentiated Not identified pT3 NA Stage III 22.68 non-smoker 0 1 0 1 0
95
+ C3N-01214 60 Male 8.4 G2 Moderately differentiated Present pT2 pN0 Stage II 21.38 current smoker 0 0 1 0 0
96
+ C3N-01220 51 Male 6.8 G4 Undifferentiated Not identified pT3 NA Stage IV 23.89 current smoker 0 0 0 0 1
97
+ C3N-01261 67 Male 5.2 G1 Well differentiated Present pT1 NA Stage I 24.02 non-smoker 0 1 0 1 0
98
+ C3N-01361 48 Male 2.5 G2 Moderately differentiated Not identified pT1 NA Stage I 39 non-smoker 0 1 0 0 0
99
+ C3N-01522 80 Male 5.5 G2 Moderately differentiated Not identified pT1 pN0 Stage I 30.78 non-smoker 1 0 0 1 1
100
+ C3N-01524 61 Male 8 G3 Poorly differentiated Not identified pT2 NA Stage II 28.38 non-smoker 0 1 0 0 0
101
+ C3N-01646 69 Male 10 G3 Poorly differentiated Not identified pT3 NA Stage III 25 current smoker 0 0 1 0 0
102
+ C3N-01648 69 Male 7.5 G2 Moderately differentiated Not identified pT2 NA Stage II 28 past smoker 0 0 0 0 0
103
+ C3N-01649 51 Male 8 G2 Moderately differentiated Not identified pT3 NA Stage III 35 past smoker 1 1 0 1 0
104
+ C3N-01651 58 Male 10 G3 Poorly differentiated Not identified pT2 NA Stage II 25 non-smoker 1 1 0 1 1
105
+ C3N-01808 47 Male 5.8 G2 Moderately differentiated Present pT1 NA Stage I 28.75 non-smoker 0 0 0 0 0
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CPTAC/CCRCC/CCRCC_phenotype.txt ADDED
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CPTAC/CCRCC/CCRCC_somatic_mutation_gene_level_binary.txt ADDED
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CPTAC/COAD/COAD_miRNAseq_mature_miRNA_RPM_log2_Tumor.txt ADDED
The diff for this file is too large to render. See raw diff
 
CPTAC/COAD/COAD_phenotype.txt ADDED
The diff for this file is too large to render. See raw diff
 
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