Datasets:

Modalities:
Image
Text
Formats:
parquet
ArXiv:
DOI:
Libraries:
Datasets
pandas
agucci commited on
Commit
168e48e
1 Parent(s): bedc51d

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +71 -2
README.md CHANGED
@@ -26,6 +26,75 @@ dataset_info:
26
  download_size: 137564710
27
  dataset_size: 137433258.06800002
28
  ---
29
- # Dataset Card for "mri-sym2"
30
 
31
- [More Information needed](https://github.com/huggingface/datasets/blob/main/CONTRIBUTING.md#how-to-contribute-to-the-dataset-cards)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
26
  download_size: 137564710
27
  dataset_size: 137433258.06800002
28
  ---
29
+ # Dataset Card for mri-sym2
30
 
31
+ ### Dataset Summary
32
+
33
+ SymBrain, an annotated dataset of brain MRI images designed to advance the field of brain symmetry detection and segmentation.
34
+ Our dataset comprises a diverse collection of brain MRI T1w and T2w scans from the [dHCP](https://biomedia.github.io/dHCP-release-notes/download.html) dataset.
35
+ Each annotated to highlight the ideal **straight** mid-sagittal plane (MSP), demarcating the brain into two symmetrical hemispheres.
36
+ The accurate extraction of the MSP has the potential to greatly enhance segmentation precision.
37
+
38
+ Researchers and practitioners can utilize this dataset to devise innovative methods for enhanced brain MRI image segmentation.
39
+ SymBrain's rich and extensive content empowers the research community to address complex challenges in neuroimaging analysis,
40
+ ultimately contributing to advancements in medical diagnostics and treatment planning.
41
+
42
+ Symmetry analysis plays an important role in medical image processing, particularly in the detection of diseases and malformations.
43
+ SymBrain leverages the inherent bilateral symmetry observed in brain MRI images,
44
+ making it an invaluable resource for the development and evaluation
45
+ of automated algorithms aimed at detecting the symmetry axis within brain MRI data.
46
+
47
+
48
+ ## Dataset Structure
49
+
50
+ The dataset contains 1476 T1w images types and 1674 T2w images.
51
+ The differences between the modalities lie in the intensity variations of the different brain areas.
52
+ All the images are accessible in the 'train' part of the dataset.
53
+
54
+
55
+ ## Dataset Creation
56
+
57
+ ### Loading the data
58
+
59
+ The dataset contains a 'train' split of 1476 rows, containing the t1 type images, and a 'test' split of 1674 rows, with the t2 type images.
60
+
61
+ ```python
62
+ dataset = load_dataset("agucci/mri-sym2")
63
+ # first dataset example selection:
64
+ dataset['train'][0]
65
+ ```
66
+
67
+ **Attributes :**
68
+ - *image:* PIL image, shape (290, 290)
69
+ - *line:* Straight line annotation coordinates on the image. ({'x':x1, 'y':y1}, {'x':x2, 'y':y2}). Where (x1,y1), (x2,y2) are the starting and end points of the line.
70
+ - *radscore:* Radiology score of the volume the image was extracted from. Please refer to [dHCP doc](https://biomedia.github.io/dHCP-release-notes/download.html#metadata) for scores explanation.
71
+ - *session:* Session-ID of the original dataset, used for scan retrieval.
72
+
73
+ ### Source Data
74
+
75
+
76
+ [dHCP](https://biomedia.github.io/dHCP-release-notes/download.html) dataset.
77
+ Three slices have been extracted from each of the 1050 3D volumes, creating 3150 images.
78
+
79
+ ### Annotations
80
+
81
+ The authors did Annotations manually with the [V7lab tools](https://www.v7labs.com/).
82
+
83
+ ### Licensing Information
84
+
85
+ [More Information Needed]
86
+
87
+ ### Citation Information
88
+
89
+ When using the data please cite :
90
+
91
+ **authors papers coming soon**
92
+
93
+ and
94
+
95
+ **dhcp dataset**
96
+ Data were provided by the developing Human Connectome Project, KCL-Imperial-
97
+ Oxford Consortium funded by the European Research Council under the Eu-
98
+ ropean Union Seventh Framework Programme (FP/2007-2013) / ERC Grant
99
+ Agreement no. [319456]. We are grateful to the families who generously sup-
100
+ ported this trial.