Datasets:

anderdnavarro

/

OncoGAN-training_files

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'SBS19', 'SBS23'}) and 5 missing columns ({'SBS3', 'TNP', 'SBS18', 'SBS13', 'SBS2'}).

This happened while the csv dataset builder was generating data using

hf://datasets/anderdnavarro/OncoGAN-training_files/donor_characteristics/CNS-PiloAstro_counts.csv (at revision b680fa0b3449298fd4fa5f3d3dbceb0db75571b3)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1869, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 580, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              DEL: int64
              INS: int64
              DNP: int64
              SBS1: int64
              SBS5: int64
              SBS8: int64
              SBS19: int64
              SBS23: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1098
              to
              {'DEL': Value(dtype='int64', id=None), 'DNP': Value(dtype='int64', id=None), 'INS': Value(dtype='int64', id=None), 'TNP': Value(dtype='int64', id=None), 'SBS1': Value(dtype='int64', id=None), 'SBS2': Value(dtype='int64', id=None), 'SBS3': Value(dtype='int64', id=None), 'SBS5': Value(dtype='int64', id=None), 'SBS8': Value(dtype='int64', id=None), 'SBS13': Value(dtype='int64', id=None), 'SBS18': Value(dtype='int64', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1392, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1041, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 999, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1740, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'SBS19', 'SBS23'}) and 5 missing columns ({'SBS3', 'TNP', 'SBS18', 'SBS13', 'SBS2'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/anderdnavarro/OncoGAN-training_files/donor_characteristics/CNS-PiloAstro_counts.csv (at revision b680fa0b3449298fd4fa5f3d3dbceb0db75571b3)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)