Update column descriptions and add note pointing to repo for more info on CSVs

README.md

@@ -129,24 +129,27 @@ Segmentation was completed by adapting the elytra length and width annotations t
   - `genus`: Genus of the individual (generated by taking the first word in the `scientificName`). There are 36 unique genera labeled.
   - `species`: Species of the individual (generated from the word(s) following the `genus` in the `scientificName`). There are 78 unique species labeled.
   - `combinedID`: Generated from `PictureID` (minus the `.jpg`) plus `_<individual>`. This gives only 11,104 IDs, as it suffers from the issue of `individual` based on Zooniverse's export. Individuals should be measured by half the number of rows with `user_name == "IsaFluck"`.
-  - `measureID`: Unique identifier for the beetle measurements, generated using the `uuid` package. There are 39,064 unique measurements (2 per beetle, with overlap on 234 images annotated by all three annotators and 1 annotated by just two).
+  - `measureID`: Unique identifier for the beetle measurements (and this CSV), generated using the `uuid` package. There are 39,064 unique measurements (2 per beetle, with overlap on 234 images annotated by all three annotators and 1 annotated by just two).
   - `file_name`: Relative path to image from the root of the directory (`<group_images>/<pictureID>.jpg`); allows for image to be displayed in the dataset viewer alongside its associated metadata.
 
 **NOTE:** 
   - The `NEON_sampleID` RMNP_014.20180709.CALADV.01 is repeated because there were too many individuals in the sample to organize them all in one picture. Thus, the individuals from this sample are split between two pictures: `A00000051555_1` and `A00000051555_2`.
   - The `NEON_sampleID` MOAB_001.S.20180724 was provided without scientific name identification.
+  - See notebooks in the [Beetle Processing Repository](https://github.com/Imageomics/2018-NEON-beetles-processing) for more information and analyses of these values, addition and renaming of the above columns from the [original measurement CSV](https://huggingface.co/datasets/imageomics/2018-NEON-beetles/blob/bbefad05d50ed55da82e99bd330afe12a5fd1d97/BeetleMeasurements.csv), and the creation of the individual metadata CSV.
 
 **TODO:* Make individual metadata CSV file:
 
 **individual_metadata.csv**:
   - `individualID`: ID of beetle in the individual image (`<measureID_length>_<measureID_width>`). This is a unique identifier for this CSV.
-  - `pictureID`: Name of the group image (`<sample-barcode>.jpg`, though sometimes it's `<NEON_sampleID_>`.jpg). Unique identifier for the 577 _group_ images, not for dataset. (Matches `pictureID` in `BeetleMeasurements.csv`.)
-  - `scientificName`: Scientific name of the specimen (`<Genus> <species>`). There are 85 different species among 36 genera.
+  - `combinedID`: Generated from `PictureID` (minus the `.jpg`) plus `_<individual>`. (Matches `combinedID` in `BeetleMeasurements.csv`.)
   - `elytraLength`: Length of the elytra in centimeters. Indicated by the green line in the image below.
   - `elytraWidth`: Width of the elytra in centimeters. Indicated by the purple line in the image below.
   - `measureID_length`: `measureID` from `BeetleMeasurements.csv` for the `elytraLength` of this individual. Can be used to fetch measure-specific information from `BeetleMeasurements.csv`.
   - `measureID_width`: `measureID` from `BeetleMeasurements.csv` for the `elytraWidth` of this individual. Can be used to fetch measure-specific information from `BeetleMeasurements.csv`.
-  - `file_name`: Relative path to image from the root of the directory (`<individual_images>/<individualID>.jpg`); allows for image to be displayed in the dataset viewer alongside its associated metadata.
+  - `genus`: Genus of the individual (generated by taking the first word in the `scientificName` from `BeetleMeasurements.csv`). There are 36 unique genera labeled.
+  - `species`: Species of the individual (generated from the word(s) following the `genus` in the `scientificName` from `BeetleMeasurements.csv). There are 78 unique species labeled.
+  - `NEON_sampleID`: NEON identifier for the sample (576 unique IDs), prefixed by the `plotID`. (Matches `NEON_sampleID` in `BeetleMeasurements.csv`.)
+  - `file_name`: Relative path to image from the root of the directory (`individual_images/<individualID>.jpg`); allows for image to be displayed in the dataset viewer alongside its associated metadata.
 
 
 |![Figure 1](https://huggingface.co/datasets/imageomics/BeetlePalooza/resolve/main/beetles.png)|