egrace479 commited on
Commit
a843530
1 Parent(s): 0e3c3c3

Create README.md

Browse files
Files changed (1) hide show
  1. README.md +153 -0
README.md ADDED
@@ -0,0 +1,153 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ task_categories:
3
+ - image-classification
4
+ tags:
5
+ - butterfly
6
+ - heliconius
7
+ - dorsal
8
+ - ventral
9
+ - RGB
10
+ - full body
11
+ - separated wings
12
+ - mimicry
13
+ - CV
14
+ pretty_name: Meier Subset of Jiggins Data
15
+ size_categories:
16
+ - 10K<n<100K
17
+ ---
18
+ # Dataset Card for Meier Subset of Jiggins Data
19
+
20
+ ## Dataset Description
21
+
22
+ - **Homepage:**
23
+ - **Repository:**
24
+ - **Paper:**
25
+ - **Leaderboard:**
26
+ - **Point of Contact:**
27
+
28
+ ### Dataset Summary
29
+
30
+ Subset of the collection records from the research group of Chris Jiggins at the University of Cambridge derived from almost 20 years of field studies.
31
+ This subset contains approximately 34,000 RGB images across all Heliconius. Many records include images as well as locality data.
32
+ All detached wings were photographed with a DSLR camera with a 100 mm macro-lens in standardized conditions; images and full records with data are stored in the [EarthCape database](https://heliconius.ecdb.io/default.aspx) and on [Zenodo](https://doi.org/10.5281/zenodo.4289223).
33
+
34
+ Both dorsal and ventral images available. Contains both whole butterfly, and 4 wings separate. Large variation in image content.
35
+
36
+ <!---
37
+ This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
38
+ --->
39
+ ### Supported Tasks and Leaderboards
40
+
41
+ [More Information Needed]
42
+
43
+ ### Languages
44
+
45
+ [More Information Needed]
46
+
47
+ ## Dataset Structure
48
+
49
+ * **Jiggins_Zenodo_Img_Master.csv:** Information for the approximately 34,000 unprocessed image files included in the Jiggins Heliconius Collection.
50
+ * To access the images combine columns `zenodo_link` and `Image_name`:
51
+ ```
52
+ zenodo_link + '/files/' + Image_name
53
+ ```
54
+
55
+ ### Data Instances
56
+
57
+ Multiple species of Heliconius including erato and melpomene.
58
+ Detached wings in four quadrants (generally).
59
+ Some subspecies may be photographed differently, needs segmentation preprocessing.
60
+
61
+ * **Type:** JPG/jpg/tif(very few)
62
+ * **Size (x pixels by y pixels):** Unknown yet
63
+ * **Background (color or none):** multiple (needs to be normalised)
64
+ * **Fit in frame:**
65
+ * **Ruler or Scale:** Some with Ruler
66
+ * **Color (ColorChecker, white-balance, None):** None
67
+
68
+ #### Preprocessing steps (to be done):
69
+ 1. Hybrid separation - some images labeled as H.erato and H. melpomene without subspecies names are hybrids and need to be determined what subspecies they are.
70
+ 2. Label correction - along with step 1.
71
+ 3. Removal of subspecies with no mimic pairs.
72
+ 4. Segmentation of four wings from images so we can focus on forewings vs hindwings: [WingSeg](https://github.com/agporto/WingSeg).
73
+
74
+ Current preprocessing steps: [WingSeg](https://github.com/agporto/WingSeg) on the [Meier subset](https://huggingface.co/datasets/imageomics/Meier-Subset-Jiggins/).
75
+
76
+ ### Data Fields
77
+
78
+ [More Information Needed]
79
+
80
+ ### Data Splits
81
+
82
+ [More Information Needed]
83
+
84
+ ## Dataset Creation
85
+
86
+ ### Curation Rationale
87
+
88
+ [More Information Needed]
89
+
90
+ ### Source Data
91
+
92
+ Image subset of the [collection records](https://doi.org/10.5281/zenodo.4289222) from the research group of Chris Jiggins at the University of Cambridge derived from almost 20 years of field studies.
93
+
94
+
95
+ #### Initial Data Collection and Normalization
96
+
97
+ [More Information Needed]
98
+
99
+ #### Who are the source language producers?
100
+
101
+ [More Information Needed]
102
+
103
+ ### Annotations
104
+
105
+ #### Annotation process
106
+
107
+ [More Information Needed]
108
+
109
+ #### Who are the annotators?
110
+
111
+ [More Information Needed]
112
+
113
+ ### Personal and Sensitive Information
114
+
115
+ None
116
+
117
+ ## Considerations for Using the Data
118
+
119
+ ### Social Impact of Dataset
120
+
121
+ [More Information Needed]
122
+
123
+ ### Discussion of Biases
124
+
125
+ [More Information Needed]
126
+
127
+ ### Other Known Limitations
128
+
129
+ [More Information Needed]
130
+
131
+ ## Additional Information
132
+
133
+ ### Dataset Curators
134
+
135
+ * Christopher Lawrence (Princeton University) - ORCID: 0000-0002-3846-5968
136
+ * Chris Jiggins (University of Cambridge) - ORCID: 0000-0002-7809-062X
137
+ * Butterfly Genetics Group (University of Cambridge)
138
+
139
+ ### Licensing Information
140
+
141
+ [More Information Needed]
142
+
143
+ ### Citation Information
144
+
145
+ Christopher Lawrence, Chris Jiggins, Butterfly Genetics Group (University of Cambridge). (2023). Jiggins_Heliconius_Collection. Hugging Face. https://huggingface.co/datasets/imageomics/Meier-Subset-Jiggins.
146
+
147
+ If you use this dataset, please cite the original dataset (citation below) as well as this curated subset.
148
+
149
+ Gabriela Montejo-Kovacevich, Eva van der Heijden, Nicola Nadeau, & Chris Jiggins. (2020). Cambridge butterfly wing collection batch 10. Zenodo. https://doi.org/10.5281/zenodo.4289223
150
+
151
+ ### Contributions
152
+
153
+ The [Imageomics Institute](https://imageomics.org) is funded by the US National Science Foundation's Harnessing the Data Revolution (HDR) Institute program under [Award #2118240](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2118240) (Imageomics: A New Frontier of Biological Information Powered by Knowledge-Guided Machine Learning).