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maize-genetics

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plexbench-base

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Buckler Lab 5

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 5 new columns ({'Chr1', '30427671', '61', '55', '60'}) and 1 missing columns ({'>Chr1 dna:chromosome chromosome:TAIR10:1:1:30427671:1 REF'}).

This happened while the csv dataset builder was generating data using

zip://genomes/Arabidopsis_thaliana/Col-1/assembly.fa.fai::/tmp/hf-datasets-cache/medium/datasets/40931744314007-config-parquet-and-info-maize-genetics-plexbench--2d8d0b38/downloads/55cf27e20a455550e93623a4c4c94fcbf9340a60b0094eb7e0b3f6b69defab83

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2256, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Chr1: string
              30427671: int64
              55: int64
              60: int64
              61: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 783
              to
              {'>Chr1 dna:chromosome chromosome:TAIR10:1:1:30427671:1 REF': Value(dtype='string', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1321, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 935, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1027, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1122, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2013, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 5 new columns ({'Chr1', '30427671', '61', '55', '60'}) and 1 missing columns ({'>Chr1 dna:chromosome chromosome:TAIR10:1:1:30427671:1 REF'}).
              
              This happened while the csv dataset builder was generating data using
              
              zip://genomes/Arabidopsis_thaliana/Col-1/assembly.fa.fai::/tmp/hf-datasets-cache/medium/datasets/40931744314007-config-parquet-and-info-maize-genetics-plexbench--2d8d0b38/downloads/55cf27e20a455550e93623a4c4c94fcbf9340a60b0094eb7e0b3f6b69defab83
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)