Create README.md
Browse files
README.md
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Based on Hack90/ref_seq_viral, using pytrf with settings:
|
| 2 |
+
```
|
| 3 |
+
pytrf.STRFinder(
|
| 4 |
+
seqdict['id'], seqdict['sequence'],
|
| 5 |
+
mono=5, di=2, tri=2, tetra=2, penta=2, hexa=2
|
| 6 |
+
)
|
| 7 |
+
```
|
| 8 |
+
and contains columns:
|
| 9 |
+
```
|
| 10 |
+
['id', 'start_pos', 'end_pos', 'motif_seq', 'motif_length', 'repeats', 'ssr_length']
|
| 11 |
+
```
|