monai
medical
katielink commited on
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e4ba616
1 Parent(s): 01573e4

update to use monai 1.0.1

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Files changed (2) hide show
  1. configs/metadata.json +4 -3
  2. docs/readme.md +1 -1
configs/metadata.json CHANGED
@@ -1,14 +1,15 @@
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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- "version": "0.2.1",
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  "changelog": {
 
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  "0.2.1": "enhance readme on commands example",
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  "0.2.0": "update license files",
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  "0.1.0": "complete the first version model package",
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  "0.0.1": "initialize the model package structure"
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  },
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- "monai_version": "1.0.0",
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- "pytorch_version": "1.12.0",
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  "numpy_version": "1.22.4",
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  "optional_packages_version": {
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  "nibabel": "4.0.1",
 
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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+ "version": "0.2.2",
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  "changelog": {
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+ "0.2.2": "update to use monai 1.0.1",
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  "0.2.1": "enhance readme on commands example",
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  "0.2.0": "update license files",
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  "0.1.0": "complete the first version model package",
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  "0.0.1": "initialize the model package structure"
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  },
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+ "monai_version": "1.0.1",
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+ "pytorch_version": "1.13.0",
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  "numpy_version": "1.22.4",
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  "optional_packages_version": {
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  "nibabel": "4.0.1",
docs/readme.md CHANGED
@@ -6,7 +6,7 @@ This model is trained using the SEResNet50 structure, whose details can be found
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  The [pytorch model](https://drive.google.com/file/d/14CS-s1uv2q6WedYQGeFbZeEWIkoyNa-x/view?usp=sharing) and [torchscript model](https://drive.google.com/file/d/1fOoJ4n5DWKHrt9QXTZ2sXwr9C-YvVGCM/view?usp=sharing) are shared in google drive. Modify the "bundle_root" parameter specified in configs/train.json and configs/inference.json to reflect where models are downloaded. Expected directory path to place downloaded models is "models/" under "bundle_root".
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  ## Data
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- Datasets used in this work were provided by [Activ Surgical](https://www.activsurgical.com/). Here is a [link](https://drive.google.com/uc?id=1rQQfHcZFs74OG0uJsL4vg7YqMWXV-s4k) of 20 samples (10 in-body and 10 out-body) to show what this dataset looks like. Modify the "dataset_dir" parameter specified in configs/train.json and configs/inference.json to reflect where the data is.
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  The input label json should be a list made up by dicts which includes "image" and "label" keys. An example format is shown below.
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  The [pytorch model](https://drive.google.com/file/d/14CS-s1uv2q6WedYQGeFbZeEWIkoyNa-x/view?usp=sharing) and [torchscript model](https://drive.google.com/file/d/1fOoJ4n5DWKHrt9QXTZ2sXwr9C-YvVGCM/view?usp=sharing) are shared in google drive. Modify the "bundle_root" parameter specified in configs/train.json and configs/inference.json to reflect where models are downloaded. Expected directory path to place downloaded models is "models/" under "bundle_root".
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  ## Data
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+ Datasets used in this work were provided by [Activ Surgical](https://www.activsurgical.com/). Here is a [link](https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/inbody_outbody_samples.zip) of 20 samples (10 in-body and 10 out-body) to show what this dataset looks like. Modify the "dataset_dir" parameter specified in configs/train.json and configs/inference.json to reflect where the data is.
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  The input label json should be a list made up by dicts which includes "image" and "label" keys. An example format is shown below.
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