monai
medical
katielink commited on
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c5d8c54
1 Parent(s): 50ca96e

add RAM usage with CacheDataset and GPU consumtion warning

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Files changed (3) hide show
  1. README.md +19 -1
  2. configs/metadata.json +2 -1
  3. docs/README.md +19 -1
README.md CHANGED
@@ -39,13 +39,25 @@ The segmentation of 104 tissues is formulated as voxel-wise multi-label segmenta
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  The training was performed with the following:
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- - GPU: 32 GB of GPU memory
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  - Actual Model Input: 96 x 96 x 96
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  - AMP: True
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  - Optimizer: AdamW
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  - Learning Rate: 1e-4
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  - Loss: DiceCELoss
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  ### Input
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  One channel
@@ -59,6 +71,12 @@ One channel
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  ## Resource Requirements and Latency Benchmarks
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  ### High-Resolution and Low-Resolution Models
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  We retrained two versions of the totalSegmentator models, following the original paper and implementation.
 
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  The training was performed with the following:
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+ - GPU: 48 GB of GPU memory
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  - Actual Model Input: 96 x 96 x 96
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  - AMP: True
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  - Optimizer: AdamW
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  - Learning Rate: 1e-4
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  - Loss: DiceCELoss
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+ ### Memory Consumption
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+
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+ - Dataset Manager: CacheDataset
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+ - Data Size: 1000 3D Volumes
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+ - Cache Rate: 0.4
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+ - Single GPU - System RAM Usage: 83G
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+ - Multi GPU (8 GPUs) - System RAM Usage: 666G
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+
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+ ### Memory Consumption Warning
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+
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+ If you face memory issues with CacheDataset, you can either switch to a regular Dataset class or lower the caching rate `cache_rate` in the configurations within range $(0, 1)$ to minimize the System RAM requirements.
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+
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  ### Input
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  One channel
 
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  ## Resource Requirements and Latency Benchmarks
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+ ### GPU Consumption Warning
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+
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+ The model is trained with 104 classes in single instance, for predicting 104 structures, the GPU consumption can be large.
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+
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+ For inference pipeline, please refer to the following section for benchmarking results. Normally, a CT scans with 300 slices will take about 27G memory, if your CT is larger, please prepare larger GPU memory or use CPU for inference.
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+
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  ### High-Resolution and Low-Resolution Models
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  We retrained two versions of the totalSegmentator models, following the original paper and implementation.
configs/metadata.json CHANGED
@@ -1,7 +1,8 @@
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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- "version": "0.1.5",
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  "changelog": {
 
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  "0.1.5": "fix mgpu finalize issue",
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  "0.1.4": "Update README Formatting",
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  "0.1.3": "add non-deterministic note",
 
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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+ "version": "0.1.6",
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  "changelog": {
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+ "0.1.6": "add RAM usage with CacheDataset and GPU consumtion warning",
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  "0.1.5": "fix mgpu finalize issue",
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  "0.1.4": "Update README Formatting",
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  "0.1.3": "add non-deterministic note",
docs/README.md CHANGED
@@ -32,13 +32,25 @@ The segmentation of 104 tissues is formulated as voxel-wise multi-label segmenta
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  The training was performed with the following:
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- - GPU: 32 GB of GPU memory
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  - Actual Model Input: 96 x 96 x 96
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  - AMP: True
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  - Optimizer: AdamW
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  - Learning Rate: 1e-4
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  - Loss: DiceCELoss
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  ### Input
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  One channel
@@ -52,6 +64,12 @@ One channel
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  ## Resource Requirements and Latency Benchmarks
54
 
 
 
 
 
 
 
55
  ### High-Resolution and Low-Resolution Models
56
 
57
  We retrained two versions of the totalSegmentator models, following the original paper and implementation.
 
32
 
33
  The training was performed with the following:
34
 
35
+ - GPU: 48 GB of GPU memory
36
  - Actual Model Input: 96 x 96 x 96
37
  - AMP: True
38
  - Optimizer: AdamW
39
  - Learning Rate: 1e-4
40
  - Loss: DiceCELoss
41
 
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+ ### Memory Consumption
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+
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+ - Dataset Manager: CacheDataset
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+ - Data Size: 1000 3D Volumes
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+ - Cache Rate: 0.4
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+ - Single GPU - System RAM Usage: 83G
48
+ - Multi GPU (8 GPUs) - System RAM Usage: 666G
49
+
50
+ ### Memory Consumption Warning
51
+
52
+ If you face memory issues with CacheDataset, you can either switch to a regular Dataset class or lower the caching rate `cache_rate` in the configurations within range $(0, 1)$ to minimize the System RAM requirements.
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+
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  ### Input
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56
  One channel
 
64
 
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  ## Resource Requirements and Latency Benchmarks
66
 
67
+ ### GPU Consumption Warning
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+
69
+ The model is trained with 104 classes in single instance, for predicting 104 structures, the GPU consumption can be large.
70
+
71
+ For inference pipeline, please refer to the following section for benchmarking results. Normally, a CT scans with 300 slices will take about 27G memory, if your CT is larger, please prepare larger GPU memory or use CPU for inference.
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+
73
  ### High-Resolution and Low-Resolution Models
74
 
75
  We retrained two versions of the totalSegmentator models, following the original paper and implementation.