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scvi-tools
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tabula-sapiens-bladder-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -54,10 +54,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.77 | 1.81 |
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- | Pearson Correlation | 0.87 | 0.88 |
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  | Spearman Correlation | 0.79 | 0.78 |
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- | R² (R-Squared) | 0.52 | 0.49 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -66,10 +66,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 16.13 |
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- | Pearson Correlation | 0.72 |
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  | Spearman Correlation | 0.76 |
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- | R² (R-Squared) | 0.03 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast | 0.96 | 1.07 | 0.75 | 0.96 | 0.33 | 0.90 | 5557.00 |
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- | macrophage | 0.93 | 1.00 | 0.74 | 0.95 | 0.30 | 0.88 | 5338.00 |
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- | bladder urothelial cell | 0.92 | 0.76 | 0.85 | 0.97 | 0.41 | 0.91 | 4151.00 |
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- | T cell | 0.94 | 1.89 | 0.73 | 0.89 | 0.25 | 0.87 | 2916.00 |
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- | myofibroblast cell | 0.92 | 1.92 | 0.65 | 0.87 | 0.34 | 0.84 | 2078.00 |
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- | plasma cell | 0.91 | 1.82 | 0.74 | 0.89 | 0.14 | 0.86 | 1141.00 |
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- | mast cell | 0.92 | 2.78 | 0.61 | 0.81 | 0.21 | 0.80 | 1029.00 |
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- | pericyte | 0.93 | 2.23 | 0.71 | 0.86 | 0.28 | 0.78 | 875.00 |
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- | mature NK T cell | 0.85 | 2.95 | 0.68 | 0.83 | 0.42 | 0.87 | 508.00 |
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- | smooth muscle cell | 0.90 | 2.92 | 0.71 | 0.81 | 0.28 | 0.82 | 290.00 |
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- | vein endothelial cell | 0.79 | 3.14 | 0.68 | 0.85 | 0.36 | 0.79 | 278.00 |
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- | B cell | 0.82 | 3.70 | 0.61 | 0.72 | 0.34 | 0.75 | 253.00 |
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- | capillary endothelial cell | 0.75 | 3.29 | 0.71 | 0.75 | 0.38 | 0.75 | 77.00 |
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- | endothelial cell of lymphatic vessel | 0.79 | 4.66 | 0.64 | 0.71 | 0.28 | 0.70 | 74.00 |
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- | plasmacytoid dendritic cell | 0.61 | 6.06 | 0.51 | 0.46 | 0.35 | 0.74 | 18.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.76 | 1.78 |
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+ | Pearson Correlation | 0.87 | 0.87 |
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  | Spearman Correlation | 0.79 | 0.78 |
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+ | R² (R-Squared) | 0.51 | 0.51 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 16.34 |
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+ | Pearson Correlation | 0.73 |
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  | Spearman Correlation | 0.76 |
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+ | R² (R-Squared) | 0.04 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | fibroblast | 0.96 | 1.05 | 0.77 | 0.96 | 0.34 | 0.90 | 5557.00 |
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+ | macrophage | 0.94 | 1.01 | 0.74 | 0.95 | 0.30 | 0.88 | 5338.00 |
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+ | bladder urothelial cell | 0.92 | 0.74 | 0.86 | 0.97 | 0.41 | 0.91 | 4151.00 |
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+ | T cell | 0.94 | 1.93 | 0.72 | 0.88 | 0.25 | 0.87 | 2916.00 |
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+ | myofibroblast cell | 0.92 | 1.80 | 0.68 | 0.87 | 0.35 | 0.84 | 2078.00 |
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+ | plasma cell | 0.91 | 1.81 | 0.74 | 0.90 | 0.14 | 0.86 | 1141.00 |
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+ | mast cell | 0.94 | 2.67 | 0.63 | 0.82 | 0.20 | 0.79 | 1029.00 |
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+ | pericyte | 0.93 | 2.12 | 0.73 | 0.87 | 0.27 | 0.78 | 875.00 |
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+ | mature NK T cell | 0.85 | 2.99 | 0.68 | 0.83 | 0.42 | 0.87 | 508.00 |
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+ | smooth muscle cell | 0.89 | 2.97 | 0.71 | 0.79 | 0.29 | 0.83 | 290.00 |
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+ | vein endothelial cell | 0.79 | 3.26 | 0.67 | 0.84 | 0.37 | 0.79 | 278.00 |
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+ | B cell | 0.85 | 3.76 | 0.60 | 0.72 | 0.34 | 0.75 | 253.00 |
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+ | capillary endothelial cell | 0.74 | 3.35 | 0.70 | 0.74 | 0.40 | 0.76 | 77.00 |
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+ | endothelial cell of lymphatic vessel | 0.78 | 4.91 | 0.62 | 0.71 | 0.29 | 0.70 | 74.00 |
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+ | plasmacytoid dendritic cell | 0.64 | 5.99 | 0.52 | 0.48 | 0.32 | 0.74 | 18.00 |
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  </details>
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