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Upload README.md with huggingface_hub
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README.md
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---
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license: cc-by-4.0
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library_name: scvi-tools
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tags:
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- biology
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- genomics
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- single-cell
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- model_cls_name:CondSCVI
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- scvi_version:0.20.0b1
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- anndata_version:0.8.0
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- modality:rna
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- tissue:Bone_Marrow
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- annotated:True
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---
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# Description
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Tabula sapiens. An across organ dataset of cell-types in human tissues.
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# Model properties
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Many model properties are in the model tags. Some more are listed below.
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**model_init_params**:
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```json
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{
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"n_hidden": 128,
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"n_latent": 5,
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"n_layers": 2,
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"weight_obs": false,
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"dropout_rate": 0.05
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}
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```
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**model_setup_anndata_args**:
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```json
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{
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"labels_key": "cell_ontology_class",
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"layer": null
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}
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```
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**model_summary_stats**:
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| Summary Stat Key | Value |
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|------------------|-------|
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| n_cells | 12293 |
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| n_labels | 14 |
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| n_vars | 4000 |
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**model_data_registry**:
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| Registry Key | scvi-tools Location |
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|--------------|---------------------------|
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| X | adata.X |
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| labels | adata.obs['_scvi_labels'] |
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**model_parent_module**: scvi.model
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**data_is_minified**: False
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# Training data
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This is an optional link to where the training data is stored if it is too large
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to host on the huggingface Model hub.
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<!-- If your model is not uploaded with any data (e.g., minified data) on the Model Hub, then make
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sure to provide this field if you want users to be able to access your training data. See the scvi-tools
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documentation for details. -->
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Training data url: https://zenodo.org/api/files/c676cd14-97a7-4ea6-ba70-2c7faa1d61d8/Bone_Marrow_training_data.h5ad
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# Training code
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This is an optional link to the code used to train the model.
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Training code url: https://github.com/scvi-hub-references/tabula_sapiens/main.py
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# References
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The Tabula Sapiens: A multi-organ, single-cell transcriptomic atlas of humans. The Tabula Sapiens Consortium. Science 2022.05.13; doi: https: //doi.org/10.1126/science.abl4896
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