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scvi-tools
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tabula-sapiens-bone_marrow-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,10 +51,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 2.38 | 2.47 |
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- | Pearson Correlation | 0.84 | 0.81 |
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  | Spearman Correlation | 0.86 | 0.84 |
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- | R² (R-Squared) | 0.54 | 0.48 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 13.58 |
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- | Pearson Correlation | 0.58 |
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- | Spearman Correlation | 0.65 |
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- | R² (R-Squared) | -1.50 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | neutrophil | 0.94 | 2.21 | 0.66 | 0.88 | 0.19 | 0.84 | 2911.00 |
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- | CD4-positive, alpha-beta T cell | 0.94 | 1.93 | 0.64 | 0.91 | 0.33 | 0.79 | 2025.00 |
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- | monocyte | 0.87 | 1.70 | 0.68 | 0.89 | 0.40 | 0.78 | 1389.00 |
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- | CD8-positive, alpha-beta T cell | 0.85 | 2.94 | 0.58 | 0.84 | 0.32 | 0.74 | 1147.00 |
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- | granulocyte | 0.76 | 2.42 | 0.63 | 0.87 | 0.47 | 0.84 | 853.00 |
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- | plasma cell | 0.76 | 2.29 | 0.72 | 0.92 | 0.19 | 0.85 | 825.00 |
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- | erythroid progenitor cell | 0.62 | 2.48 | 0.67 | 0.91 | 0.49 | 0.89 | 757.00 |
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- | mature NK T cell | 0.81 | 3.78 | 0.57 | 0.77 | 0.33 | 0.69 | 678.00 |
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- | hematopoietic stem cell | 0.89 | 2.25 | 0.65 | 0.87 | 0.53 | 0.85 | 617.00 |
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- | memory B cell | 0.89 | 4.68 | 0.55 | 0.68 | 0.33 | 0.70 | 310.00 |
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- | common myeloid progenitor | 0.73 | 2.48 | 0.73 | 0.89 | 0.54 | 0.88 | 287.00 |
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- | macrophage | 0.84 | 4.55 | 0.62 | 0.69 | 0.34 | 0.79 | 265.00 |
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- | naive B cell | 0.89 | 5.33 | 0.60 | 0.68 | 0.26 | 0.66 | 142.00 |
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- | erythrocyte | 0.91 | 5.13 | 0.55 | 0.49 | 0.33 | 0.90 | 87.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 2.37 | 2.42 |
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+ | Pearson Correlation | 0.84 | 0.82 |
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  | Spearman Correlation | 0.86 | 0.84 |
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+ | R² (R-Squared) | 0.53 | 0.50 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 13.41 |
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+ | Pearson Correlation | 0.59 |
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+ | Spearman Correlation | 0.66 |
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+ | R² (R-Squared) | -1.47 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | neutrophil | 0.96 | 2.20 | 0.65 | 0.88 | 0.18 | 0.84 | 2911.00 |
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+ | CD4-positive, alpha-beta T cell | 0.95 | 1.96 | 0.62 | 0.90 | 0.34 | 0.79 | 2025.00 |
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+ | monocyte | 0.87 | 1.71 | 0.68 | 0.88 | 0.40 | 0.77 | 1389.00 |
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+ | CD8-positive, alpha-beta T cell | 0.86 | 2.96 | 0.58 | 0.85 | 0.32 | 0.74 | 1147.00 |
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+ | granulocyte | 0.74 | 2.52 | 0.62 | 0.88 | 0.46 | 0.83 | 853.00 |
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+ | plasma cell | 0.77 | 2.35 | 0.70 | 0.91 | 0.19 | 0.85 | 825.00 |
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+ | erythroid progenitor cell | 0.61 | 2.34 | 0.70 | 0.91 | 0.49 | 0.89 | 757.00 |
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+ | mature NK T cell | 0.81 | 3.70 | 0.58 | 0.78 | 0.33 | 0.69 | 678.00 |
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+ | hematopoietic stem cell | 0.91 | 2.30 | 0.64 | 0.88 | 0.53 | 0.85 | 617.00 |
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+ | memory B cell | 0.88 | 4.38 | 0.58 | 0.69 | 0.33 | 0.70 | 310.00 |
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+ | common myeloid progenitor | 0.71 | 2.65 | 0.70 | 0.89 | 0.55 | 0.88 | 287.00 |
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+ | macrophage | 0.86 | 4.46 | 0.63 | 0.70 | 0.34 | 0.78 | 265.00 |
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+ | naive B cell | 0.91 | 5.27 | 0.60 | 0.67 | 0.26 | 0.66 | 142.00 |
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+ | erythrocyte | 0.92 | 5.10 | 0.55 | 0.50 | 0.32 | 0.90 | 87.00 |
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  </details>
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