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b/lightning_logs/version_2/events.out.tfevents.1733442309.Yoseflab-R13B.365372.13 new file mode 100644 index 0000000000000000000000000000000000000000..beba4332fd72350bac1aee4b99325c4c18d90568 --- /dev/null +++ b/lightning_logs/version_2/events.out.tfevents.1733442309.Yoseflab-R13B.365372.13 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4d18fb8f789ec805b0242fbbf9af55cc5c66fb226498f8403ca5af36d8e4a18c +size 341680 diff --git a/lightning_logs/version_2/events.out.tfevents.1733442414.Yoseflab-R13B.365372.14 b/lightning_logs/version_2/events.out.tfevents.1733442414.Yoseflab-R13B.365372.14 new file mode 100644 index 0000000000000000000000000000000000000000..a4c0a937416b0e6105cb0176fa7aaff73284bf6e --- /dev/null +++ b/lightning_logs/version_2/events.out.tfevents.1733442414.Yoseflab-R13B.365372.14 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:22c091e20061c28820bb2bf0ae7c4c8ca54f2e3a679029f87ecb03c02c629911 +size 170860 diff --git a/lightning_logs/version_2/hparams.yaml b/lightning_logs/version_2/hparams.yaml new file mode 100644 index 0000000000000000000000000000000000000000..0967ef424bce6791893e9a57bb952f80fd536e93 --- /dev/null +++ b/lightning_logs/version_2/hparams.yaml @@ -0,0 +1 @@ +{} diff --git a/metrics.json b/metrics.json new file mode 100644 index 0000000000000000000000000000000000000000..91ba6fa81e118573caff40620b9c78711feffc8a --- /dev/null +++ b/metrics.json @@ -0,0 +1,5 @@ +{ + "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.57 | 1.63 |\n| Pearson Correlation | 0.87 | 0.87 |\n| Spearman Correlation | 0.70 | 0.68 |\n| R\u00b2 (R-Squared) | 0.69 | 0.70 |", + "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 4.67 |\n| Pearson Correlation | 0.85 |\n| Spearman Correlation | 0.95 |\n| R\u00b2 (R-Squared) | -0.12 |", + "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| CD4-positive, alpha-beta T cell | 0.86 | 2.43 | 0.21 | 0.62 | 0.23 | 0.86 | 5257.00 |\n| CD8-positive, alpha-beta T cell | 0.85 | 3.78 | 0.32 | 0.55 | 0.27 | 0.77 | 2231.00 |\n| enterocyte of epithelium of small intestine | 0.84 | 3.92 | 0.30 | 0.66 | 0.49 | 0.89 | 1100.00 |\n| B cell | 0.89 | 6.85 | 0.31 | 0.31 | 0.41 | 0.80 | 441.00 |\n| plasma cell | 0.83 | 7.12 | 0.20 | 0.26 | 0.37 | 0.88 | 303.00 |\n| small intestine goblet cell | 0.81 | 6.44 | 0.25 | 0.49 | 0.50 | 0.84 | 300.00 |\n| paneth cell of epithelium of small intestine | 0.73 | 7.34 | 0.35 | 0.48 | 0.49 | 0.85 | 177.00 |\n| intestinal tuft cell | 0.76 | 8.95 | 0.23 | 0.21 | 0.45 | 0.80 | 146.00 |\n| transit amplifying cell of small intestine | 0.78 | 6.67 | 0.39 | 0.44 | 0.46 | 0.82 | 127.00 |\n| fibroblast | 0.67 | 7.72 | 0.27 | 0.52 | 0.58 | 0.89 | 88.00 |\n| intestinal crypt stem cell of small intestine | 0.71 | 6.70 | 0.43 | 0.59 | 0.58 | 0.89 | 71.00 |\n| mast cell | 0.32 | 8.92 | 0.29 | 0.17 | 0.40 | 0.81 | 65.00 |\n| neutrophil | 0.57 | 10.03 | 0.24 | 0.19 | 0.45 | 0.80 | 64.00 |\n| monocyte | 0.62 | 10.47 | 0.24 | 0.30 | 0.51 | 0.86 | 61.00 |\n| gut endothelial cell | 0.31 | 10.40 | 0.27 | 0.20 | 0.44 | 0.79 | 15.00 |\n| intestinal enteroendocrine cell | 0.28 | 8.45 | 0.34 | 0.24 | 0.36 | 0.67 | 12.00 |" +} \ No newline at end of file diff --git a/model.pt b/model.pt index 2b8708ae7911b8d38f70ccce700048543f2112b6..fe2bbb89ac9a1595a0b5f1a3691dbf6623a14a57 100644 --- a/model.pt +++ b/model.pt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:d85f3ae769baebb30695326e8688c49885c171bf0cb6d8149b813838d9abf2bb -size 4554814 +oid sha256:954c1deaf56bbc70c5c3ecdbf96fa35e8b2e0a731ce7bc4759f71b9ff8790ae4 +size 3461950