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hexviz

Commit History

First draft of "Find interesting heads" page
2410bbd

aksell commited on

Add table of top_n attention pairs
b7cb94d

aksell commited on

Make model selector more compact
1b13d7f

aksell commited on

Add sections to sidebar
b3a37f0

aksell commited on

Move attention parameters to sidebar
6bb6142

aksell commited on

Label top n attention pairs
4355c21

aksell commited on

Change default layer and tweak text
beb84f6

aksell commited on

Allow highlighting of residues
61419b7

aksell commited on

Allow selecting individual chains
58b87e3

aksell commited on

Plot avg attention not sum
3de389d

aksell commited on

Reduce attention cylinder size
97dc04c

aksell commited on

Acknowledge provis in the README
2baeea3

aksell commited on

Remove Prot-T5 and ProtGPT2
386fb31

aksell commited on

Link to provis as a source for the attention visualization
6002f51

aksell commited on

Changet test structure in get_structure
d1b48a1

aksell commited on

Clean up view
bf964bb

aksell commited on

Show EC class if using ZymCTRL and EC class is available in PDB
79ff34a

aksell commited on

Add PROT BERT
1c423ed

aksell commited on

Update requirements.txt from poetry
02840f4

aksell commited on

Link to RCSB structure
f60f302

aksell commited on

Hide min attention slider in expander
c621eec

aksell commited on

Split attention.py into attention.py and models.py
eb9ae1f

aksell commited on

Cache TAPE-BERT loading
e07549d

aksell commited on

Disable ProtGPT2
4a42326

aksell commited on

Add ProtGPT2 model
2338bb4

aksell commited on

Remove unused debuging code path
1431daf

aksell commited on

Update text and title
db81f50

aksell commited on

Cache get_attention and get_structure
ff8eaa8

aksell commited on

Add ZymCTRL model
cfba77f

aksell commited on

WIP: Start adding ProtT5
5b6d16d

aksell commited on

Remove sidebar title
4ad80db

aksell commited on

Remove redundant app.py
6fea74c

aksell commited on

Downgrade streamlit - 1.17
0f66182

aksell commited on

Restore old README.md
61d307b

aksell commited on

Use python 3.8.9
9938060

aksell commited on

Simplify README.md metadata
b7bfd49

aksell commited on

Move app.py to top level
59008d0

aksell commited on

Export requirements.txt from poetry
53ba5a6

aksell commited on

Add default huggingface .gitatributes file
c42816d

aksell commited on

Add metadata to run in huggingface spaces
e2061b9

aksell commited on

Rename project protention -> hexviz
28d4b1e

aksell commited on

Fix zero indexing of head and layer selector
9a7dfe2

aksell commited on

Visualize attention pairs on structure
58c7b8d

aksell commited on

Add ModelType enum and Model class to hold layers and head count
ebbe380

aksell commited on

Implement get_attention for tape BERT
466a8f2

aksell commited on

Add get_sequence
b7ab123

aksell commited on

Add get_protT5
87c0dbc

aksell commited on

Add .gitignore
f12036e

aksell commited on

Add get_structure
f8402f9

aksell commited on

Add basic streamlit view using stmol
08dc5f2

aksell commited on