models/seed_qformer/vit.py

"""
 Copyright (c) 2022, salesforce.com, inc.
 All rights reserved.
 SPDX-License-Identifier: BSD-3-Clause
 For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause
 
 Based on timm code base
 https://github.com/rwightman/pytorch-image-models/tree/master/timm
"""

import math
import torch
import torch.nn as nn
import torch.nn.functional as F
from functools import partial

from timm.models.vision_transformer import _cfg, PatchEmbed
from timm.models.registry import register_model
from timm.models.layers import trunc_normal_, DropPath
from timm.models.helpers import named_apply, adapt_input_conv


class Mlp(nn.Module):
    """MLP as used in Vision Transformer, MLP-Mixer and related networks"""
    def __init__(
        self,
        in_features,
        hidden_features=None,
        out_features=None,
        act_layer=nn.GELU,
        drop=0.0,
    ):
        super().__init__()
        out_features = out_features or in_features
        hidden_features = hidden_features or in_features
        self.fc1 = nn.Linear(in_features, hidden_features)
        self.act = act_layer()
        self.fc2 = nn.Linear(hidden_features, out_features)
        self.drop = nn.Dropout(drop)

    def forward(self, x):
        x = self.fc1(x)
        x = self.act(x)
        x = self.drop(x)
        x = self.fc2(x)
        x = self.drop(x)
        return x


class Attention(nn.Module):
    def __init__(
        self,
        dim,
        num_heads=8,
        qkv_bias=False,
        qk_scale=None,
        attn_drop=0.0,
        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (self.qkv(x).reshape(B, N, 3, self.num_heads, C // self.num_heads).permute(2, 0, 3, 1, 4))
        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)

        attn = (q @ k.transpose(-2, -1)) * self.scale
        attn = attn.softmax(dim=-1)
        attn = self.attn_drop(attn)

        if register_hook:
            self.save_attention_map(attn)
            attn.register_hook(self.save_attn_gradients)

        x = (attn @ v).transpose(1, 2).reshape(B, N, C)
        x = self.proj(x)
        x = self.proj_drop(x)
        return x


class Block(nn.Module):
    def __init__(
        self,
        dim,
        num_heads,
        mlp_ratio=4.0,
        qkv_bias=False,
        qk_scale=None,
        drop=0.0,
        attn_drop=0.0,
        drop_path=0.0,
        act_layer=nn.GELU,
        norm_layer=nn.LayerNorm,
        use_grad_checkpointing=False,
    ):
        super().__init__()
        self.norm1 = norm_layer(dim)
        self.attn = Attention(
            dim,
            num_heads=num_heads,
            qkv_bias=qkv_bias,
            qk_scale=qk_scale,
            attn_drop=attn_drop,
            proj_drop=drop,
        )
        # NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
        self.drop_path = DropPath(drop_path) if drop_path > 0.0 else nn.Identity()
        self.norm2 = norm_layer(dim)
        mlp_hidden_dim = int(dim * mlp_ratio)
        self.mlp = Mlp(
            in_features=dim,
            hidden_features=mlp_hidden_dim,
            act_layer=act_layer,
            drop=drop,
        )

        # if use_grad_checkpointing:
        #     self.attn = checkpoint_wrapper(self.attn)
        #     self.mlp = checkpoint_wrapper(self.mlp)

    def forward(self, x, register_hook=False):
        x = x + self.drop_path(self.attn(self.norm1(x), register_hook=register_hook))
        x = x + self.drop_path(self.mlp(self.norm2(x)))
        return x


class VisionTransformer(nn.Module):
    """Vision Transformer
    A PyTorch impl of : `An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale`  -
        https://arxiv.org/abs/2010.11929
    """
    def __init__(
        self,
        img_size=224,
        patch_size=16,
        in_chans=3,
        num_classes=1000,
        embed_dim=768,
        depth=12,
        num_heads=12,
        mlp_ratio=4.0,
        qkv_bias=True,
        qk_scale=None,
        representation_size=None,
        drop_rate=0.0,
        attn_drop_rate=0.0,
        drop_path_rate=0.0,
        norm_layer=None,
        use_grad_checkpointing=False,
        ckpt_layer=0,
    ):
        """
        Args:
            img_size (int, tuple): input image size
            patch_size (int, tuple): patch size
            in_chans (int): number of input channels
            num_classes (int): number of classes for classification head
            embed_dim (int): embedding dimension
            depth (int): depth of transformer
            num_heads (int): number of attention heads
            mlp_ratio (int): ratio of mlp hidden dim to embedding dim
            qkv_bias (bool): enable bias for qkv if True
            qk_scale (float): override default qk scale of head_dim ** -0.5 if set
            representation_size (Optional[int]): enable and set representation layer (pre-logits) to this value if set
            drop_rate (float): dropout rate
            attn_drop_rate (float): attention dropout rate
            drop_path_rate (float): stochastic depth rate
            norm_layer: (nn.Module): normalization layer
        """
        super().__init__()
        self.num_features = (self.embed_dim) = embed_dim  # num_features for consistency with other models
        norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)

        self.patch_embed = PatchEmbed(
            img_size=img_size,
            patch_size=patch_size,
            in_chans=in_chans,
            embed_dim=embed_dim,
        )

        num_patches = self.patch_embed.num_patches

        self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
        self.pos_embed = nn.Parameter(torch.zeros(1, num_patches + 1, embed_dim))
        self.pos_drop = nn.Dropout(p=drop_rate)

        dpr = [x.item() for x in torch.linspace(0, drop_path_rate, depth)]  # stochastic depth decay rule
        self.blocks = nn.ModuleList([
            Block(
                dim=embed_dim,
                num_heads=num_heads,
                mlp_ratio=mlp_ratio,
                qkv_bias=qkv_bias,
                qk_scale=qk_scale,
                drop=drop_rate,
                attn_drop=attn_drop_rate,
                drop_path=dpr[i],
                norm_layer=norm_layer,
                use_grad_checkpointing=(use_grad_checkpointing and i >= depth - ckpt_layer),
            ) for i in range(depth)
        ])
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(B, -1, -1)  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, :x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)


@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:
                w = w.transpose([1, 0])
        return torch.from_numpy(w)

    w = np.load(checkpoint_path)
    if not prefix and "opt/target/embedding/kernel" in w:
        prefix = "opt/target/"

    if hasattr(model.patch_embed, "backbone"):
        # hybrid
        backbone = model.patch_embed.backbone
        stem_only = not hasattr(backbone, "stem")
        stem = backbone if stem_only else backbone.stem
        stem.conv.weight.copy_(adapt_input_conv(stem.conv.weight.shape[1], _n2p(w[f"{prefix}conv_root/kernel"])))
        stem.norm.weight.copy_(_n2p(w[f"{prefix}gn_root/scale"]))
        stem.norm.bias.copy_(_n2p(w[f"{prefix}gn_root/bias"]))
        if not stem_only:
            for i, stage in enumerate(backbone.stages):
                for j, block in enumerate(stage.blocks):
                    bp = f"{prefix}block{i + 1}/unit{j + 1}/"
                    for r in range(3):
                        getattr(block, f"conv{r + 1}").weight.copy_(_n2p(w[f"{bp}conv{r + 1}/kernel"]))
                        getattr(block, f"norm{r + 1}").weight.copy_(_n2p(w[f"{bp}gn{r + 1}/scale"]))
                        getattr(block, f"norm{r + 1}").bias.copy_(_n2p(w[f"{bp}gn{r + 1}/bias"]))
                    if block.downsample is not None:
                        block.downsample.conv.weight.copy_(_n2p(w[f"{bp}conv_proj/kernel"]))
                        block.downsample.norm.weight.copy_(_n2p(w[f"{bp}gn_proj/scale"]))
                        block.downsample.norm.bias.copy_(_n2p(w[f"{bp}gn_proj/bias"]))
        embed_conv_w = _n2p(w[f"{prefix}embedding/kernel"])
    else:
        embed_conv_w = adapt_input_conv(model.patch_embed.proj.weight.shape[1], _n2p(w[f"{prefix}embedding/kernel"]))
    model.patch_embed.proj.weight.copy_(embed_conv_w)
    model.patch_embed.proj.bias.copy_(_n2p(w[f"{prefix}embedding/bias"]))
    model.cls_token.copy_(_n2p(w[f"{prefix}cls"], t=False))
    pos_embed_w = _n2p(w[f"{prefix}Transformer/posembed_input/pos_embedding"], t=False)
    if pos_embed_w.shape != model.pos_embed.shape:
        pos_embed_w = resize_pos_embed(  # resize pos embedding when different size from pretrained weights
            pos_embed_w,
            model.pos_embed,
            getattr(model, "num_tokens", 1),
            model.patch_embed.grid_size,
        )
    model.pos_embed.copy_(pos_embed_w)
    model.norm.weight.copy_(_n2p(w[f"{prefix}Transformer/encoder_norm/scale"]))
    model.norm.bias.copy_(_n2p(w[f"{prefix}Transformer/encoder_norm/bias"]))
    #     if isinstance(model.head, nn.Linear) and model.head.bias.shape[0] == w[f'{prefix}head/bias'].shape[-1]:
    #         model.head.weight.copy_(_n2p(w[f'{prefix}head/kernel']))
    #         model.head.bias.copy_(_n2p(w[f'{prefix}head/bias']))
    #     if isinstance(getattr(model.pre_logits, 'fc', None), nn.Linear) and f'{prefix}pre_logits/bias' in w:
    #         model.pre_logits.fc.weight.copy_(_n2p(w[f'{prefix}pre_logits/kernel']))
    #         model.pre_logits.fc.bias.copy_(_n2p(w[f'{prefix}pre_logits/bias']))
    for i, block in enumerate(model.blocks.children()):
        block_prefix = f"{prefix}Transformer/encoderblock_{i}/"
        mha_prefix = block_prefix + "MultiHeadDotProductAttention_1/"
        block.norm1.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_0/scale"]))
        block.norm1.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_0/bias"]))
        block.attn.qkv.weight.copy_(
            torch.cat([_n2p(w[f"{mha_prefix}{n}/kernel"], t=False).flatten(1).T for n in ("query", "key", "value")]))
        block.attn.qkv.bias.copy_(
            torch.cat([_n2p(w[f"{mha_prefix}{n}/bias"], t=False).reshape(-1) for n in ("query", "key", "value")]))
        block.attn.proj.weight.copy_(_n2p(w[f"{mha_prefix}out/kernel"]).flatten(1))
        block.attn.proj.bias.copy_(_n2p(w[f"{mha_prefix}out/bias"]))
        for r in range(2):
            getattr(block.mlp, f"fc{r + 1}").weight.copy_(_n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/kernel"]))
            getattr(block.mlp, f"fc{r + 1}").bias.copy_(_n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/bias"]))
        block.norm2.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/scale"]))
        block.norm2.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/bias"]))


def resize_pos_embed(posemb, posemb_new, num_tokens=1, gs_new=()):
    # Rescale the grid of position embeddings when loading from state_dict. Adapted from
    # https://github.com/google-research/vision_transformer/blob/00883dd691c63a6830751563748663526e811cee/vit_jax/checkpoint.py#L224
    print("Resized position embedding: %s to %s", posemb.shape, posemb_new.shape)
    ntok_new = posemb_new.shape[1]
    if num_tokens:
        posemb_tok, posemb_grid = posemb[:, :num_tokens], posemb[0, num_tokens:]
        ntok_new -= num_tokens
    else:
        posemb_tok, posemb_grid = posemb[:, :0], posemb[0]
    gs_old = int(math.sqrt(len(posemb_grid)))
    if not len(gs_new):  # backwards compatibility
        gs_new = [int(math.sqrt(ntok_new))] * 2
    assert len(gs_new) >= 2
    print("Position embedding grid-size from %s to %s", [gs_old, gs_old], gs_new)
    posemb_grid = posemb_grid.reshape(1, gs_old, gs_old, -1).permute(0, 3, 1, 2)
    posemb_grid = F.interpolate(posemb_grid, size=gs_new, mode="bicubic", align_corners=False)
    posemb_grid = posemb_grid.permute(0, 2, 3, 1).reshape(1, gs_new[0] * gs_new[1], -1)
    posemb = torch.cat([posemb_tok, posemb_grid], dim=1)
    return


def interpolate_pos_embed(pos_embed_checkpoint, visual_encoder):
    # interpolate position embedding
    embedding_size = pos_embed_checkpoint.shape[-1]
    num_patches = visual_encoder.patch_embed.num_patches
    num_extra_tokens = visual_encoder.pos_embed.shape[-2] - num_patches
    # height (== width) for the checkpoint position embedding
    orig_size = int((pos_embed_checkpoint.shape[-2] - num_extra_tokens)**0.5)
    # height (== width) for the new position embedding
    new_size = int(num_patches**0.5)

    if orig_size != new_size:
        # class_token and dist_token are kept unchanged
        extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
        # only the position tokens are interpolated
        pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
        pos_tokens = pos_tokens.reshape(-1, orig_size, orig_size, embedding_size).permute(0, 3, 1, 2)
        pos_tokens = torch.nn.functional.interpolate(pos_tokens, size=(new_size, new_size), mode="bicubic", align_corners=False)
        pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
        new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
        print("reshape position embedding from %d to %d" % (orig_size**2, new_size**2))

        return new_pos_embed
    else:
        return pos_embed_checkpoint