testing

.gitattributes

@@ -34,5 +34,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
 *db* filter=lfs diff=lfs merge=lfs -text
-vaccine_coverage_study.db filter=lfs diff=lfs merge=lfs -text
-*.db filter=lfs diff=lfs merge=lfs -text
+vaccine_coverage_study.db filter=lfs diff=lfs merge=lfs -text

initialize_db.py

@@ -1,91 +1,3 @@
-import sqlite3
-import json
-import os
-from config import DB_PATH, METADATA_FILE, PDF_DIR
-
-
-def initialize_database():
-    conn = sqlite3.connect(DB_PATH)
-    cursor = conn.cursor()
-
-    # Create tables
-    cursor.execute(
-        """
-    CREATE TABLE IF NOT EXISTS items (
-        key TEXT PRIMARY KEY,
-        title TEXT,
-        abstract TEXT,
-        authors TEXT,
-        year INTEGER,
-        doi TEXT
-    )
-    """
-    )
-
-    cursor.execute(
-        """
-    CREATE TABLE IF NOT EXISTS attachments (
-        key TEXT PRIMARY KEY,
-        parent_key TEXT,
-        content BLOB,
-        FOREIGN KEY (parent_key) REFERENCES items (key)
-    )
-    """
-    )
-
-    conn.commit()
-    conn.close()
-
-
-def populate_database():
-    if not os.path.exists(METADATA_FILE):
-        print(f"Metadata file not found: {METADATA_FILE}")
-        return
-
-    with open(METADATA_FILE, "r") as f:
-        metadata = json.load(f)
-
-    conn = sqlite3.connect(DB_PATH)
-    cursor = conn.cursor()
-
-    for item_key, item_data in metadata.items():
-        metadata = item_data["metadata"]
-        cursor.execute(
-            """
-        INSERT OR REPLACE INTO items (key, title, abstract, authors, year, doi)
-        VALUES (?, ?, ?, ?, ?, ?)
-        """,
-            (
-                item_key,
-                metadata["title"],
-                metadata["abstract"],
-                metadata["authors"],
-                metadata["year"],
-                metadata["doi"],
-            ),
-        )
-
-        pdf_path = item_data.get("pdf_path")
-        if pdf_path:
-            full_pdf_path = os.path.join(PDF_DIR, os.path.basename(pdf_path))
-            if os.path.exists(full_pdf_path):
-                with open(full_pdf_path, "rb") as pdf_file:
-                    pdf_content = pdf_file.read()
-                    cursor.execute(
-                        """
-                    INSERT OR REPLACE INTO attachments (key, parent_key, content)
-                    VALUES (?, ?, ?)
-                    """,
-                        (os.path.basename(pdf_path), item_key, pdf_content),
-                    )
-            else:
-                print(f"PDF file not found: {full_pdf_path}")
-
-    conn.commit()
-    conn.close()
-
-
-if __name__ == "__main__":
-    initialize_database()
-    populate_database()
-    print("Database initialized and populated.")
+version https://git-lfs.github.com/spec/v1
+oid sha256:c0cb2cf50f14d131b1e999cee44652575fd1029141514dfc2e028af1419b0d46
+size 2344