ci: removed some old references to files and folders that docker build should copy from local, add missing files

Dockerfile

@@ -33,15 +33,20 @@ RUN echo "arg dep:"
 
 # Set working directory to function root directory
 WORKDIR ${LAMBDA_TASK_ROOT}
-COPY requirements_poetry.txt pyproject.toml poetry.lock README.md ${LAMBDA_TASK_ROOT}/
+RUN git clone -n --depth=1 --filter=tree:0 https://huggingface.co/spaces/aletrn/samgis-lisa-on-cuda ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda && \
+    cd ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda && \
+    git sparse-checkout set --no-cone README.md p\* requirements_poetry.txt static dockerfiles wrappers scripts && \
+    git checkout
+COPY --from=builder_global  ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda/dockerfiles/apt_preferences_ubuntu /etc/apt/preferences
+COPY --from=builder_global  ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda/dockerfiles/ubuntu.sources /etc/apt/sources.list.d/ubuntu.sources
+RUN ls -l /etc/apt/preferences
+RUN ls -l /etc/apt/sources.list.d/ubuntu.sources
 
 RUN cat /etc/lsb-release
 # avoid segment-geospatial exception caused by missing libGL.so.1 library
 RUN echo "BUILDER: check libz.s* before start" && ls -l /usr/lib/${ARCH}-linux-gnu/libz.so*
 
 RUN apt update && apt upgrade -y && apt install -y libgl1 curl python3-pip git-lfs && apt clean
-COPY ./dockerfiles/apt_preferences_ubuntu /etc/apt/preferences
-COPY ./dockerfiles/ubuntu.sources /etc/apt/sources.list.d/ubuntu.sources
 #RUN echo "run update noble..."
 #RUN apt update
 #RUN apt update && apt install -t noble zlib1g -y
@@ -51,7 +56,7 @@ RUN echo "BUILDER: check libz.s* after install from trixie" && ls -l /usr/lib/${
 RUN ls -l /etc/apt/sources* /etc/apt/preferences*
 
 # poetry installation path is NOT within ${LAMBDA_TASK_ROOT}: not needed for runtime docker image
-RUN python -m pip install -r ${LAMBDA_TASK_ROOT}/requirements_poetry.txt
+RUN python -m pip install -r ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda/requirements_poetry.txt
 
 RUN which poetry && poetry --version && poetry config --list
 RUN poetry config virtualenvs.path ${LAMBDA_TASK_ROOT}
@@ -104,7 +109,7 @@ ENV PATH="$PNPM_HOME:$PATH"
 
 RUN corepack enable
 
-COPY ./static /appnode
+COPY --from=builder_global ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda/static /appnode
 WORKDIR /appnode
 # RUN if [ "${DEPENDENCY_GROUP}" = "fastapi" ]; then echo "pnpm store path:" && pnpm store path; fi
 RUN ls -l /appnode
@@ -147,7 +152,7 @@ RUN df -h
 RUN echo "creating FASTAPI_STATIC folder: ${FASTAPI_STATIC}, use `mkdir -p` to avoid failure if missing parent folder ..."
 RUN mkdir -p ${FASTAPI_STATIC}
 
-COPY --from=builder_global  ${LAMBDA_TASK_ROOT}/sam-quantized/machine_learning_models \
+COPY --from=builder_global ${LAMBDA_TASK_ROOT}/sam-quantized/machine_learning_models \
     ${LAMBDA_TASK_ROOT}/machine_learning_models
 RUN ls -ld ${LAMBDA_TASK_ROOT}/machine_learning_models
 RUN ls -lh ${LAMBDA_TASK_ROOT}/machine_learning_models
@@ -169,9 +174,8 @@ ENV IS_AWS_LAMBDA=""
 # Set working directory to function root directory
 WORKDIR ${LAMBDA_TASK_ROOT}
 
-COPY samgis_lisa_on_cuda ${LAMBDA_TASK_ROOT}/samgis_lisa_on_cuda
-COPY wrappers ${LAMBDA_TASK_ROOT}/wrappers
-COPY scripts ${LAMBDA_TASK_ROOT}/scripts
+COPY --from=builder_global ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda/wrappers ${LAMBDA_TASK_ROOT}/wrappers
+COPY --from=builder_global ${LAMBDA_TASK_ROOT}/samgis-lisa-on-cuda/scripts ${LAMBDA_TASK_ROOT}/scripts
 RUN chmod +x ${LAMBDA_TASK_ROOT}/scripts/entrypoint.sh
 RUN chmod +x  ${LAMBDA_TASK_ROOT}/scripts/docker_entrypoint.sh
 RUN ls -l ${LAMBDA_TASK_ROOT}/scripts/entrypoint.sh ${LAMBDA_TASK_ROOT}/scripts/docker_entrypoint.sh
@@ -179,6 +183,8 @@ RUN ls -l ${LAMBDA_TASK_ROOT}/scripts/entrypoint.sh ${LAMBDA_TASK_ROOT}/scripts/
 RUN ls -l /usr/bin/which
 RUN /usr/bin/which python
 RUN python --version
+RUN node --version
+RUN npm --version
 RUN echo "PYTHONPATH: ${PYTHONPATH}."
 RUN echo "PATH: ${PATH}."
 RUN echo "LAMBDA_TASK_ROOT: ${LAMBDA_TASK_ROOT}."

dockerfiles/apt_preferences_ubuntu

@@ -0,0 +1,9 @@
+Explanation: Uninstall or do not install any Debian-originated
+Explanation: package versions other than those in the stable distro
+Package: *
+Pin: release a=stable
+Pin-Priority: 900
+
+Package: zlib1g
+Pin: release a=noble
+Pin-Priority: -10

dockerfiles/ubuntu.sources

@@ -0,0 +1,18 @@
+deb http://it.archive.ubuntu.com/ubuntu/ jammy main universe restricted multiverse
+deb-src http://it.archive.ubuntu.com/ubuntu/ jammy main universe restricted multiverse
+
+deb http://security.ubuntu.com/ubuntu jammy-security main universe restricted multiverse
+deb-src http://security.ubuntu.com/ubuntu jammy-security main universe restricted multiverse
+
+deb http://it.archive.ubuntu.com/ubuntu/ jammy-updates main universe restricted multiverse
+deb-src http://it.archive.ubuntu.com/ubuntu/ jammy-updates main universe restricted multiverse
+
+
+deb http://it.archive.ubuntu.com/ubuntu/ noble main universe restricted multiverse
+deb-src http://it.archive.ubuntu.com/ubuntu/ noble main universe restricted multiverse
+
+deb http://security.ubuntu.com/ubuntu noble-security main universe restricted multiverse
+deb-src http://security.ubuntu.com/ubuntu noble-security main universe restricted multiverse
+
+deb http://it.archive.ubuntu.com/ubuntu/ noble-updates main universe restricted multiverse
+deb-src http://it.archive.ubuntu.com/ubuntu/ noble-updates main universe restricted multiverse

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "samgis-lisa-on-cuda"
-version = "1.5.7"
+version = "1.6.0"
 description = "A VLM backend for machine learning instance segmentation on geospatial data that uses LISA (Reasoning Segmentation via Large Language Model). This demo uses a dedicated GPU."
 authors = ["alessandro trinca tornidor <alessandro@trinca.tornidor.com>"]
 license = "MIT license"
@@ -9,7 +9,7 @@ package-mode = false
 
 [metadata]
 name = "samgis-lisa-on-cuda"
-version = "1.5.7"
+version = "1.6.0"
 
 [tool.poetry.dependencies]
 python = ">=3.10,<3.11"