import os import logging import sys # Function to get logging level from environment variable def get_logging_level(default_level=logging.DEBUG): # Default to DEBUG for detailed logs log_level_str = os.getenv('VISION_AGENT_LOG_LEVEL', '').upper() if log_level_str == 'DEBUG': return logging.DEBUG elif log_level_str == 'INFO': return logging.INFO elif log_level_str == 'WARNING': return logging.WARNING elif log_level_str == 'ERROR': return logging.ERROR elif log_level_str == 'CRITICAL': return logging.CRITICAL else: return default_level # Set up logging before importing the library logging_level = get_logging_level() logging.basicConfig(stream=sys.stdout, level=logging_level) _LOGGER = logging.getLogger(__name__) # Explicitly set logging level for the vision-agent library vision_agent_logger = logging.getLogger('vision_agent') vision_agent_logger.setLevel(logging_level) # Set logging level for Hugging Face libraries hf_hub_logger = logging.getLogger('huggingface_hub') hf_hub_logger.setLevel(logging_level) datasets_logger = logging.getLogger('datasets') datasets_logger.setLevel(logging_level) # Print the logging level to verify it's set correctly print(f"Logging level set to: {logging.getLevelName(logging_level)}") from huggingface_hub import login import time import gradio as gr from typing import * from pillow_heif import register_heif_opener register_heif_opener() import vision_agent as va from vision_agent.tools import register_tool, load_image, owl_v2, overlay_bounding_boxes, save_image # Perform login using the token hf_token = os.getenv("HF_TOKEN") login(token=hf_token, add_to_git_credential=True) import numpy as np from PIL import Image def detect_brain_tumor(image, seg_input, debug: bool = True): """ Detects a brain tumor in the given image and returns the annotated image. Parameters: image: The input image (as numpy array provided by Gradio). seg_input: The segmentation input (not used in this function, but required for Gradio). debug (bool): Flag to enable logging for debugging purposes. Returns: tuple: (numpy array of image, list of (label, (x1, y1, x2, y2)) tuples) """ if debug: _LOGGER.debug(f"Image received, shape: {image.shape}") # Step 2: Detect brain tumor using owl_v2 prompt = "detect brain tumor" detections = owl_v2(prompt, image) if debug: _LOGGER.debug(f"Raw detections: {detections}") # Step 3: Overlay bounding boxes on the image image_with_bboxes = overlay_bounding_boxes(image, detections) if debug: _LOGGER.debug("Bounding boxes overlaid on the image") # Prepare annotations for AnnotatedImage output annotations = [] for detection in detections: label = detection['label'] score = detection['score'] bbox = detection['bbox'] x1, y1, x2, y2 = bbox # Convert normalized coordinates to pixel coordinates height, width = image.shape[:2] x1, y1, x2, y2 = int(x1*width), int(y1*height), int(x2*width), int(y2*height) annotations.append(((x1, y1, x2, y2), f"{label} {score:.2f}")) if debug: _LOGGER.debug(f"Annotations: {annotations}") # Convert image to numpy array if it's not already if isinstance(image_with_bboxes, Image.Image): image_with_bboxes = np.array(image_with_bboxes) return (image_with_bboxes, annotations) INTRO_TEXT="# 🔬🧠 OmniScience -- Agentic Imaging Analysis 🤖🧫" with gr.Blocks(css="style.css") as demo: gr.Markdown(INTRO_TEXT) with gr.Tab("Segment/Detect"): with gr.Row(): with gr.Column(): image = gr.Image(type="numpy") seg_input = gr.Text(label="Entities to Segment/Detect", value="detect brain tumor") with gr.Column(): annotated_image = gr.AnnotatedImage(label="Output") seg_btn = gr.Button("Submit") examples = [["./examples/194_jpg.rf.3e3dd592d034bb5ee27a978553819f42.jpg", "detect brain tumor"], ["./examples/239_jpg.rf.3dcc0799277fb78a2ab21db7761ccaeb.jpg", "detect brain tumor"], ["./examples/1385_jpg.rf.3c67cb92e2922dba0e6dba86f69df40b.jpg", "detect brain tumor"], ["./examples/1491_jpg.rf.3c658e83538de0fa5a3f4e13d7d85f12.jpg", "detect brain tumor"], ["./examples/1550_jpg.rf.3d067be9580ec32dbee5a89c675d8459.jpg", "detect brain tumor"], ["./examples/2256_jpg.rf.3afd7903eaf3f3c5aa8da4bbb928bc19.jpg", "detect brain tumor"], ["./examples/2871_jpg.rf.3b6eadfbb369abc2b3bcb52b406b74f2.jpg", "detect brain tumor"], ["./examples/2921_jpg.rf.3b952f91f27a6248091e7601c22323ad.jpg", "detect brain tumor"], ] gr.Examples( examples=examples, inputs=[image, seg_input], ) seg_inputs = [ image, seg_input ] seg_outputs = [ annotated_image ] seg_btn.click( fn=detect_brain_tumor, inputs=seg_inputs, outputs=seg_outputs, ) if __name__ == "__main__": demo.queue(max_size=10).launch(debug=True)