Spaces:
Running
on
A10G
Running
on
A10G
igashov
commited on
Commit
•
8d6141b
1
Parent(s):
53f22d0
examples
Browse files- app.py +5 -1
- examples/example_1.sdf +52 -0
- examples/example_2.sdf +85 -0
app.py
CHANGED
@@ -162,7 +162,11 @@ with demo:
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with gr.Column():
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gr.Markdown('## Input Fragments')
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gr.Markdown('Upload the file with 3D-coordinates of the input fragments in .pdb, .mol2 or .sdf format:')
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input_file = gr.File(file_count='single', label='Input
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button = gr.Button('Generate Linker!')
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gr.Markdown('')
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gr.Markdown('## Output Files')
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with gr.Column():
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gr.Markdown('## Input Fragments')
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gr.Markdown('Upload the file with 3D-coordinates of the input fragments in .pdb, .mol2 or .sdf format:')
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input_file = gr.File(file_count='single', label='Input Fragments')
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gr.Examples(
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examples=['examples/example_1.sdf', 'examples/example_2.sdf'],
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inputs=input_file,
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)
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button = gr.Button('Generate Linker!')
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gr.Markdown('')
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gr.Markdown('## Output Files')
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examples/example_1.sdf
ADDED
@@ -0,0 +1,52 @@
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example_1
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OpenBabel10162201143D
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23 23 0 0 0 0 0 0 0 0999 V2000
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1.7607 0.5222 2.9642 C 0 0 0 0 0 1 0 0 0 0 0 0
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2.6964 -0.2235 2.2177 O 0 0 0 0 0 0 0 0 0 0 0 0
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2.3096 -0.7133 1.0156 C 0 0 0 0 0 0 0 0 0 0 0 0
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1.0374 -0.5914 0.4895 C 0 0 0 0 0 3 0 0 0 0 0 0
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0.7447 -1.0988 -0.7748 C 0 0 0 0 0 3 0 0 0 0 0 0
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1.7189 -1.7463 -1.5082 C 0 0 0 0 0 3 0 0 0 0 0 0
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2.9908 -1.9020 -0.9738 C 0 0 0 0 0 3 0 0 0 0 0 0
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3.3059 -1.3917 0.2733 C 0 0 0 0 0 0 0 0 0 0 0 0
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4.5236 -1.4769 0.8717 O 0 0 0 0 0 0 0 0 0 0 0 0
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5.5651 -2.1202 0.1811 C 0 0 0 0 0 1 0 0 0 0 0 0
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-1.5356 1.4890 0.7225 O 0 0 0 0 0 0 0 0 0 0 0 0
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-1.9292 0.8049 -0.2055 C 0 0 0 0 0 3 0 0 0 0 0 0
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-3.1330 0.2346 -0.2776 N 0 0 0 0 0 2 0 0 0 0 0 0
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-4.0925 0.2460 0.8072 C 0 0 0 0 0 3 0 0 0 0 0 0
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-4.2119 -1.1551 1.4241 C 0 0 0 0 0 2 0 0 0 0 0 0
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-5.2662 -1.8357 0.5573 C 0 0 0 0 0 2 0 0 0 0 0 0
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-6.3102 -0.7361 0.3683 C 0 0 0 0 0 2 0 0 0 0 0 0
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-5.5003 0.5663 0.2683 C 0 0 0 0 0 2 0 0 0 0 0 0
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0.8985 1.5439 -2.6786 C 0 0 0 0 0 3 0 0 0 0 0 0
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0.0863 1.4407 -1.5888 C 0 0 0 0 0 3 0 0 0 0 0 0
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0.5652 2.5273 -0.3347 S 0 0 0 0 0 0 0 0 0 0 0 0
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1.8586 3.1109 -1.3037 C 0 0 0 0 0 3 0 0 0 0 0 0
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1.9172 2.5055 -2.5161 C 0 0 0 0 0 3 0 0 0 0 0 0
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2 1 1 0 0 0 0
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3 2 1 0 0 0 0
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4 3 1 0 0 0 0
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5 4 2 0 0 0 0
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6 7 2 0 0 0 0
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6 5 1 0 0 0 0
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7 8 1 0 0 0 0
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8 9 1 0 0 0 0
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8 3 2 0 0 0 0
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10 9 1 0 0 0 0
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12 11 2 0 0 0 0
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13 12 1 0 0 0 0
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13 14 1 0 0 0 0
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14 15 1 0 0 0 0
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16 15 1 0 0 0 0
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17 16 1 0 0 0 0
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18 17 1 0 0 0 0
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18 14 1 0 0 0 0
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19 23 1 0 0 0 0
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19 20 2 0 0 0 0
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20 21 1 0 0 0 0
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22 21 1 0 0 0 0
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23 22 2 0 0 0 0
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M END
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$$$$
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examples/example_2.sdf
ADDED
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example_2
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OpenBabel10162201143D
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39 40 0 0 1 0 0 0 0 0999 V2000
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-4.3312 -0.0988 0.2512 C 0 0 0 0 0 3 0 0 0 0 0 0
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-3.7191 -1.0977 -0.0699 O 0 0 0 0 0 0 0 0 0 0 0 0
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-5.5766 0.2093 -0.1116 N 0 0 0 0 0 2 0 0 0 0 0 0
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-6.4225 -0.5877 -1.0205 C 0 0 0 0 0 0 0 0 0 0 0 0
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-7.7541 0.1471 -1.1418 C 0 0 0 0 0 1 0 0 0 0 0 0
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-6.6320 -1.9777 -0.4192 C 0 0 0 0 0 1 0 0 0 0 0 0
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-5.7367 -0.6872 -2.3833 C 0 0 0 0 0 1 0 0 0 0 0 0
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-1.9707 4.1957 0.1103 C 0 0 0 0 0 1 0 0 0 0 0 0
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-1.0017 3.8045 -0.9779 C 0 0 0 0 0 0 0 0 0 0 0 0
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-1.4446 3.5018 -2.2622 C 0 0 0 0 0 3 0 0 0 0 0 0
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-0.5362 3.0719 -3.2140 C 0 0 0 0 0 3 0 0 0 0 0 0
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0.7920 2.9396 -2.8383 C 0 0 0 0 0 3 0 0 0 0 0 0
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1.2303 3.2327 -1.6259 N 0 0 0 0 0 0 0 0 0 0 0 0
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0.3615 3.6654 -0.7291 C 0 0 0 0 0 3 0 0 0 0 0 0
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-2.9086 -0.7475 2.7906 C 0 0 0 0 0 1 0 0 0 0 0 0
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-1.6921 -1.6964 2.9551 C 0 0 1 0 0 3 0 0 0 0 0 0
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-1.8466 -2.4745 4.1086 O 0 0 0 0 0 1 0 0 0 0 0 0
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-1.4647 -2.5332 1.6798 C 0 0 0 0 0 2 0 0 0 0 0 0
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-0.0343 -2.4727 1.1331 C 0 0 1 0 0 3 0 0 0 0 0 0
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0.0772 -3.4160 -0.0885 C 0 0 0 0 0 2 0 0 0 0 0 0
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1.4553 -3.4505 -0.6886 C 0 0 0 0 0 0 0 0 0 0 0 0
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1.7054 -2.8769 -1.9283 C 0 0 0 0 0 3 0 0 0 0 0 0
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2.9764 -2.9089 -2.4753 C 0 0 0 0 0 3 0 0 0 0 0 0
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4.0153 -3.5069 -1.7847 C 0 0 0 0 0 3 0 0 0 0 0 0
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3.7772 -4.0803 -0.5474 C 0 0 0 0 0 3 0 0 0 0 0 0
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2.5056 -4.0537 -0.0039 C 0 0 0 0 0 3 0 0 0 0 0 0
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0.3324 -1.0719 0.6876 C 0 0 0 0 0 0 0 0 0 0 0 0
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-0.5146 -0.1934 0.4588 O 0 0 0 0 0 0 0 0 0 0 0 0
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1.6273 -0.8145 0.5579 N 0 0 0 0 0 2 0 0 0 0 0 0
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2.1247 0.4405 0.0487 C 0 0 1 0 0 3 0 0 0 0 0 0
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2.5750 1.4249 1.1002 C 0 0 0 0 0 0 0 0 0 0 0 0
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2.0501 1.6717 2.3505 C 0 0 0 0 0 3 0 0 0 0 0 0
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2.6299 2.6641 3.1298 C 0 0 0 0 0 3 0 0 0 0 0 0
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3.7129 3.3859 2.6570 C 0 0 0 0 0 3 0 0 0 0 0 0
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4.2517 3.1220 1.4045 C 0 0 0 0 0 3 0 0 0 0 0 0
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3.6793 2.1335 0.6302 C 0 0 0 0 0 0 0 0 0 0 0 0
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4.0727 1.6389 -0.7309 C 0 0 0 0 0 2 0 0 0 0 0 0
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3.4146 0.2503 -0.7903 C 0 0 1 0 0 3 0 0 0 0 0 0
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4.2179 -0.7549 -0.2227 O 0 0 0 0 0 1 0 0 0 0 0 0
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2 1 2 0 0 0 0
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3 1 1 0 0 0 0
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4 6 1 0 0 0 0
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4 3 1 0 0 0 0
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5 4 1 0 0 0 0
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7 4 1 0 0 0 0
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9 14 1 0 0 0 0
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9 8 1 0 0 0 0
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10 9 2 0 0 0 0
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11 12 2 0 0 0 0
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11 10 1 0 0 0 0
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12 13 1 0 0 0 0
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13 14 2 0 0 0 0
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16 15 1 6 0 0 0
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16 17 1 0 0 0 0
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18 16 1 0 0 0 0
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19 20 1 6 0 0 0
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19 18 1 0 0 0 0
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21 20 1 0 0 0 0
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21 26 1 0 0 0 0
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22 21 2 0 0 0 0
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23 22 1 0 0 0 0
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23 24 2 0 0 0 0
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24 25 1 0 0 0 0
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25 26 2 0 0 0 0
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27 19 1 0 0 0 0
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28 27 2 0 0 0 0
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29 27 1 0 0 0 0
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30 29 1 1 0 0 0
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30 31 1 0 0 0 0
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31 32 1 0 0 0 0
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32 33 2 0 0 0 0
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34 33 1 0 0 0 0
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35 34 2 0 0 0 0
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36 31 2 0 0 0 0
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36 35 1 0 0 0 0
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37 36 1 0 0 0 0
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38 37 1 0 0 0 0
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38 39 1 1 0 0 0
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38 30 1 0 0 0 0
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M END
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$$$$
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