zhouxiangxin1998 commited on
Commit
0f14261
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1 Parent(s): e549c4d

add new antibody csvs

Browse files
.gitignore CHANGED
@@ -11,4 +11,5 @@ eval-results/
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  eval-queue-bk/
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  eval-results-bk/
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  logs/
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- read_csv.py
 
 
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  eval-queue-bk/
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  eval-results-bk/
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  logs/
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+ read_csv.py
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+ .DS_store
data_link/antibody_design_wLink.csv ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
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+ Model,AAR ↑,RMSD ↓,TM-score ↑,Binding Energy ↓,SeqSim-outer ↓,SeqSim-inner ↑,PHR (%) ↓,CN-score ↑,Clashes-inner ↓,Clashes-outer ↓,SeqNat ↑,Total Energy ↓,scRMSD ↓
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+ <a href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006112">RAbD</a>(natural),100.00,0.00,1.00,-15.33,0.26,NaN,45.78,50.19,0.07,0.00,-1.74,-16.76,1.77
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+ <a href="https://github.com/wengong-jin/abdockgen">HERN</a>,33.17,9.86,0.16,1242.77,0.41,NaN,39.83,0.04,0.04,3.25,-1.47,5408.74,9.89
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+ <a href="https://github.com/THUNLP-MT/MEAN">MEAN</a>,33.47,1.82,0.25,263.90,0.65,NaN,40.74,1.33,11.65,0.29,-1.83,1077.32,2.77
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+ <a href="https://github.com/THUNLP-MT/dyMEAN">dyMEAN</a>,40.95,2.36,0.36,889.28,0.58,NaN,42.04,1.49,9.15,0.47,-1.79,1642.65,2.11
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+ <a href="https://github.com/THUNLP-MT/dyMEAN">*dyMEAN-FixFR</a>,40.05,2.37,0.35,612.75,0.60,0.96,43.75,1.14,8.88,0.48,-1.82,1239.29,2.48
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+ <a href="https://github.com/luost26/diffab">*DiffAb</a>,35.04,2.53,0.37,489.42,0.37,0.45,40.68,2.02,1.84,0.19,-1.88,495.69,2.57
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+ <a href="https://arxiv.org/html/2403.16576v2">*AbDPO</a>,31.29,2.79,0.35,116.06,0.38,0.60,69.69,1.33,4.14,0.10,-1.99,270.12,2.79
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+ <a href="https://arxiv.org/html/2403.16576v2">*AbDPO++</a>,36.25,2.48,0.35,223.73,0.39,0.54,44.51,2.34,1.66,0.08,-1.78,338.14,2.50
data_rank/antibody_design_RankTerms.csv ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ ο»ΏAAR ↑,RMSD ↓,TM-score ↑,Binding Energy ↓,SeqSim-outer ↓,SeqSim-inner ↑,PHR (%) ↓,CN-score ↑,Clashes-inner ↓,Clashes-outer ↓,SeqNat ↑,Total Energy ↓,scRMSD ↓
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+ -1,1,-1,1,1,0,1,-1,1,1,-1,1,1