Model,apo-TM ↑,holo-TM ↑,TMens ↑,Pairwise TM,CA clash (%) ↓,CA break (%) ↓,PepBond break (%) ↓
apo model,1.000,0.790,0.895,N/A,N/A,N/A,N/A
EigenFold,0.831,0.864,0.847,0.907,3.6,0.3,N/A
MSA-depth256,0.845,0.889,0.867,0.978,0.2,0.0,4.6
MSA-depth64,0.844,0.883,0.863,0.950,0.2,0.0,5.7
MSA-depth32,0.824,0.857,0.841,0.864,0.2,0.0,8.9
Str2Str-ODE (Tmax=0.1),0.762,0.778,0.770,0.954,0.2,0.0,14.0
Str2Str-ODE (Tmax=0.3),0.766,0.781,0.774,0.872,0.2,0.0,14.7
Str2Str-SDE (Tmax=0.1),0.682,0.693,0.688,0.760,0.2,1.5,22.6
Str2Str-SDE (Tmax=0.3),0.680,0.689,0.684,0.639,0.2,1.4,21.1
AlphaFlow-PDB,0.855,0.891,0.873,0.924,0.3,0.0,6.6
AlphaFlow-MD,0.857,0.863,0.860,0.894,0.2,0.0,20.8
ESMFlow-PDB,0.849,0.882,0.866,0.935,0.3,0.0,4.8
ESMFlow-MD,0.851,0.864,0.858,0.897,0.1,0.0,10.9
ConfDiff-Open-ClsFree,0.838,0.879,0.859,0.870,0.8,0.0,5.8
ConfDiff-Open-MD,0.839,0.874,0.857,0.863,0.4,0.0,6.8
ConfDiff-ESM-ClsFree,0.837,0.864,0.850,0.846,0.7,0.0,4.6
ConfDiff-ESM-MD,0.836,0.862,0.849,0.846,0.3,0.0,4.1