yiminghuang47
commited on
Commit
•
66e54a1
1
Parent(s):
cbf46f6
Training in progress, step 500
Browse files- .gitignore +1 -0
- config.json +28 -0
- merges.txt +507 -0
- pytorch_model.bin +3 -0
- runs/Aug07_19-32-36_4b153642ef4e/events.out.tfevents.1691436796.4b153642ef4e.398.0 +3 -0
- special_tokens_map.json +15 -0
- tokenizer.json +1364 -0
- tokenizer_config.json +65 -0
- training_args.bin +3 -0
- vocab.json +1 -0
.gitignore
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checkpoint-*/
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config.json
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{
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"_name_or_path": "seyonec/ChemBERTa-zinc-base-v1",
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"architectures": [
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"RobertaForMaskedLM"
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],
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"attention_probs_dropout_prob": 0.1,
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"bos_token_id": 0,
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"classifier_dropout": null,
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"eos_token_id": 2,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"layer_norm_eps": 1e-05,
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"max_position_embeddings": 514,
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"model_type": "roberta",
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"num_attention_heads": 12,
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"num_hidden_layers": 6,
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"output_past": true,
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"pad_token_id": 1,
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"position_embedding_type": "absolute",
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"torch_dtype": "float32",
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"transformers_version": "4.31.0",
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"type_vocab_size": 1,
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"use_cache": true,
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"vocab_size": 767
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}
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merges.txt
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#version: 0.2
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c c
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C C
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( =
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cc c
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6 |
+
] (
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7 |
+
@ @
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8 |
+
C c
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9 |
+
N C
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10 |
+
cc ccc
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11 |
+
n c
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12 |
+
CC C
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13 |
+
) [
|
14 |
+
N H
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15 |
+
+ ]
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+
C O
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+
cc cc
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+
N c
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19 |
+
C l
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+
O C
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+
CC N
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+
) (
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23 |
+
CO c
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+
( -
|
25 |
+
( [
|
26 |
+
CC CC
|
27 |
+
C N
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28 |
+
) (=
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29 |
+
- ]
|
30 |
+
CC O
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31 |
+
n H
|
32 |
+
n n
|
33 |
+
-] )
|
34 |
+
+ ](
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35 |
+
CC c
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36 |
+
) =
|
37 |
+
s c
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+
C S
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+
n cc
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+
B r
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+
C NC
|
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+
n nc
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+
N Cc
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44 |
+
o c
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45 |
+
1 2
|
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+
CC CCC
|
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+
+] (=
|
48 |
+
CO C
|
49 |
+
C n
|
50 |
+
2 1
|
51 |
+
CCC N
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52 |
+
c n
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+
O c
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+
CC OC
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+
+] [
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+
CCO CC
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+
c nc
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+
CC S
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+
]( [
|
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+
CCO c
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+
ccc s
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+
ccc nc
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+
N CC
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+
O CC
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+
( /
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+
CCC O
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+
@ ]
|
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+
CS c
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+
ccc o
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+
@@ ]
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+
c nn
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+
CC n
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+
CC NC
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+
3 2
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+
cccc n
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+
2 3
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+
n o
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+
+] )
|
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+
n oc
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+
) /
|
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+
c sc
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+
c s
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+
cc ncc
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+
ccc n
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+
CC Cc
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+
S c
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+
S CC
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+
cc nc
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+
S C
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+
O Cc
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+
cc sc
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+
cc n
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+
N NC
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+
O CO
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+
@ ](
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+
nc nc
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+
N S
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+
N CCc
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+
@@ ](
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+
C Nc
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+
O CCO
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+
= [
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+
n cccc
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+
c ncc
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+
N N
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+
CCCC CC
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+
N CCC
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+
o n
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+
+]( [
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CC CCN
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CCC NC
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nc n
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-] )[
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ncc s
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+
+] =
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+
CS C
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+
CCC n
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+
s ccc
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+
S Cc
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+
CCS c
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+
cnc n
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+
( \
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+
CO CC
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+
3 4
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+
nn nn
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+
n ccc
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+
CO Cc
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+
cc oc
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+
)( [
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+
ncc n
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+
CCC Oc
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+
n cccn
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+
cc nn
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+
CN S
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+
@@] (=
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+
CCS C
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+
4 3
|
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+
CO CCN
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+
F c
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+
CCS CC
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+
CCC S
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+
cncc n
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-]) =
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+
/ [
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@] (=
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+
c oc
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+
c nnc
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+
CS CC
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+
nn n
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+
N Nc
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+
nn nc
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+
N CCN
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+
nnc n
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+
+] )[
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+
CCCC O
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+
nc nn
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+
CC l
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+
CC Nc
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+
Cl c
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+
CS Cc
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+
O CCCO
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cnn n
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+
NCC NC
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+
o ccc
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+
o nc
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+
CCN S
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+
O CCC
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+
)= [
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+
CCC OC
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+
CCCC NC
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+
CO CCn
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+
ncc nc
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+
F C
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+
CCCC CCC
|
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+
cs cc
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+
1 3
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+
N O
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+
cn ccc
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+
(\ [
|
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+
O CCN
|
181 |
+
n s
|
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+
n sc
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+
CO CCNC
|
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+
N CCOc
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+
CCCC n
|
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+
csc n
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+
NCC n
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+
NCCC n
|
189 |
+
+] )(
|
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+
NCC Cc
|
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+
CCCC c
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+
cc on
|
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+
sc nc
|
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+
CCC Nc
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+
nc sc
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+
N n
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+
N CCCN
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+
no nc
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+
Br c
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+
N CCS
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+
S CCC
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+
CO CCO
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+
nnc s
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+
CN Cc
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+
s cc
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+
s ccn
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+
N CCCC
|
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+
(= [
|
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+
CO CCOc
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+
3 1
|
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+
oc nc
|
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+
ns nc
|
213 |
+
O CCc
|
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+
CCO Cc
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+
O S
|
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+
nc oc
|
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+
cnc nc
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+
CO CCC
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+
NCC Nc
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220 |
+
CCC l
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+
nn sc
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+
CS CCS
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+
CO CCCNC
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+
S CCc
|
225 |
+
c o
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+
CCCC S
|
227 |
+
OCC NC
|
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+
N CCO
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229 |
+
CCC Sc
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+
+] \
|
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+
-]) /
|
232 |
+
CS CN
|
233 |
+
CCCC Oc
|
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+
\ [
|
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+
CCCCC N
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236 |
+
CO CCCN
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+
CS CCO
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+
) -
|
239 |
+
O CCOc
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+
ccc nn
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241 |
+
CO N
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242 |
+
CCO CCN
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+
N CCCO
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244 |
+
S CCN
|
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+
+] /
|
246 |
+
CCC SCC
|
247 |
+
OCC n
|
248 |
+
cs nn
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249 |
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@ ]([
|
250 |
+
C Br
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+
4 5
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+
cc no
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+
O CCCC
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]( /
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)( /
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+
CS CCC
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s nc
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@@ ]([
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+
CO CCc
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O N
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+
CCC SC
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2 4
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+] )([
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O COC
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ccnc n
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N CCSc
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CCC OCC
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CCN CC
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nn cc
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CCCCC NC
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(/ [
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5 4
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nc on
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CO CCCC
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N CCOC
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+
CCCC OC
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CS CCN
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ncc o
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CCS Cc
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nnc o
|
281 |
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CO NC
|
282 |
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|
283 |
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|
284 |
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|
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|
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|
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|
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|
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|
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|
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|
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OCC F
|
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|
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NCCS Cc
|
453 |
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( #
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454 |
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- [
|
455 |
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3 12
|
456 |
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F CCC
|
457 |
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I C
|
458 |
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I c
|
459 |
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N Oc
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460 |
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O NC
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1140 |
+
"CCN Cc",
|
1141 |
+
"N CCOCC",
|
1142 |
+
"N NS",
|
1143 |
+
"O CCCN",
|
1144 |
+
"N OCc",
|
1145 |
+
"OCC Cc",
|
1146 |
+
") \\",
|
1147 |
+
"N CCCCn",
|
1148 |
+
"O CCCNC",
|
1149 |
+
"S CCOc",
|
1150 |
+
"CCC F",
|
1151 |
+
"CCCN S",
|
1152 |
+
"OCC Nc",
|
1153 |
+
"CCCC l",
|
1154 |
+
"CCO CCO",
|
1155 |
+
"NCCC OC",
|
1156 |
+
"O CCS",
|
1157 |
+
"S CCS",
|
1158 |
+
"o cc",
|
1159 |
+
"CN CCc",
|
1160 |
+
"CCCCC n",
|
1161 |
+
"CO CCCn",
|
1162 |
+
"CN CC",
|
1163 |
+
"CCO CCCNC",
|
1164 |
+
"NCCC NC",
|
1165 |
+
"Cl C",
|
1166 |
+
"-] )(",
|
1167 |
+
"-]) =[",
|
1168 |
+
"O CCOC",
|
1169 |
+
"cn oc",
|
1170 |
+
"cnc s",
|
1171 |
+
"NC N",
|
1172 |
+
"CCCC Sc",
|
1173 |
+
"CN n",
|
1174 |
+
"CCO CCC",
|
1175 |
+
"NCCC Sc",
|
1176 |
+
"S CCO",
|
1177 |
+
"CCCC Nc",
|
1178 |
+
"CCO NC",
|
1179 |
+
"N OC",
|
1180 |
+
"CO CO",
|
1181 |
+
"CN N",
|
1182 |
+
"CN CCN",
|
1183 |
+
"-] [",
|
1184 |
+
"CCOCC NC",
|
1185 |
+
"NCCC S",
|
1186 |
+
"NCCC Oc",
|
1187 |
+
"N CCCCC",
|
1188 |
+
"O CCSc",
|
1189 |
+
"] /",
|
1190 |
+
"OC n",
|
1191 |
+
"CS CCNC",
|
1192 |
+
"N OCC",
|
1193 |
+
"O CCCn",
|
1194 |
+
"cc s",
|
1195 |
+
"+] =[",
|
1196 |
+
"OC N",
|
1197 |
+
"(- [",
|
1198 |
+
"CCO CCCC",
|
1199 |
+
"CCCCC O",
|
1200 |
+
"CCOCC S",
|
1201 |
+
"CCOCC n",
|
1202 |
+
"CCS CCC",
|
1203 |
+
"COCC Nc",
|
1204 |
+
"NCCN S",
|
1205 |
+
"S CCCS",
|
1206 |
+
"s n",
|
1207 |
+
"cc nnc",
|
1208 |
+
"CC Br",
|
1209 |
+
"CO CCOCC",
|
1210 |
+
"CO CCSc",
|
1211 |
+
"Cl Cc",
|
1212 |
+
"CCCC Cc",
|
1213 |
+
"-] /",
|
1214 |
+
"CS CCCNC",
|
1215 |
+
"cnc o",
|
1216 |
+
"cnn s",
|
1217 |
+
")/ [",
|
1218 |
+
"COCCN S",
|
1219 |
+
"O CCCOc",
|
1220 |
+
"] [",
|
1221 |
+
"CO CCCOc",
|
1222 |
+
"CS CCCN",
|
1223 |
+
"NCC CCN",
|
1224 |
+
"CO CCS",
|
1225 |
+
"CO CCCNc",
|
1226 |
+
"CCO CCOc",
|
1227 |
+
"CCCCC S",
|
1228 |
+
"N CCSC",
|
1229 |
+
"O P",
|
1230 |
+
"S CCCC",
|
1231 |
+
"CO n",
|
1232 |
+
"CO CCCOC",
|
1233 |
+
"CCCC OCC",
|
1234 |
+
"CCCC CCNC",
|
1235 |
+
"CS CCc",
|
1236 |
+
"CS CCn",
|
1237 |
+
"Br Cc",
|
1238 |
+
"NCCCN S",
|
1239 |
+
"3 5",
|
1240 |
+
"S CCn",
|
1241 |
+
"o ncc",
|
1242 |
+
"CO P",
|
1243 |
+
"Cl CC",
|
1244 |
+
"-] =[",
|
1245 |
+
"CCO P",
|
1246 |
+
"CS CCCCNC",
|
1247 |
+
"cn sn",
|
1248 |
+
"OCCO CCOCCO",
|
1249 |
+
"NCCC Nc",
|
1250 |
+
"OCCC l",
|
1251 |
+
"OCCC Sc",
|
1252 |
+
"C I",
|
1253 |
+
"N CCCCCC",
|
1254 |
+
"N CCSCC",
|
1255 |
+
"N CCOCc",
|
1256 |
+
"O CCCCC",
|
1257 |
+
"O CCNS",
|
1258 |
+
"O CCSCc",
|
1259 |
+
"S CN",
|
1260 |
+
"S Cn",
|
1261 |
+
"S CCNC",
|
1262 |
+
"S CCCOc",
|
1263 |
+
"c onc",
|
1264 |
+
"CO COc",
|
1265 |
+
"CCCC CCCCCCC",
|
1266 |
+
"CCO CCOC",
|
1267 |
+
"CCOCC Cc",
|
1268 |
+
"OCC CCN",
|
1269 |
+
"CCCO Cc",
|
1270 |
+
"NCCC OCC",
|
1271 |
+
"ns cc",
|
1272 |
+
"NCCCC l",
|
1273 |
+
"NCCCC Oc",
|
1274 |
+
"4 1",
|
1275 |
+
"C H",
|
1276 |
+
"N SC",
|
1277 |
+
"O H",
|
1278 |
+
"O n",
|
1279 |
+
"O CCOCC",
|
1280 |
+
"O CCSCC",
|
1281 |
+
"O CCCS",
|
1282 |
+
"S N",
|
1283 |
+
"S CCCc",
|
1284 |
+
"]( /[",
|
1285 |
+
"CCC SCc",
|
1286 |
+
"CO S",
|
1287 |
+
"CO CCCCC",
|
1288 |
+
"CCCC CCCC",
|
1289 |
+
"CCCC CCO",
|
1290 |
+
"CCCC CCS",
|
1291 |
+
"CN CCC",
|
1292 |
+
"-] )([",
|
1293 |
+
"CCO CCCN",
|
1294 |
+
"CCO CCCNc",
|
1295 |
+
"CCO CCOCc",
|
1296 |
+
"+]( -",
|
1297 |
+
"CS CCOc",
|
1298 |
+
"CS CCSC",
|
1299 |
+
"CCCN CC",
|
1300 |
+
"cn sc",
|
1301 |
+
"CCOCC Nc",
|
1302 |
+
"CCS S",
|
1303 |
+
"CCS CCOC",
|
1304 |
+
"OCC F",
|
1305 |
+
"OCC Br",
|
1306 |
+
"NCCS Cc",
|
1307 |
+
"( #",
|
1308 |
+
"- [",
|
1309 |
+
"3 12",
|
1310 |
+
"F CCC",
|
1311 |
+
"I C",
|
1312 |
+
"I c",
|
1313 |
+
"N Oc",
|
1314 |
+
"O NC",
|
1315 |
+
"O CCSC",
|
1316 |
+
"O CCCCn",
|
1317 |
+
"O CCOCCS",
|
1318 |
+
"S H",
|
1319 |
+
"S CCOC",
|
1320 |
+
"S CCCO",
|
1321 |
+
"S CCSc",
|
1322 |
+
"s sc",
|
1323 |
+
"s snc",
|
1324 |
+
"CCC Br",
|
1325 |
+
"CCC NCc",
|
1326 |
+
"CO CCCCN",
|
1327 |
+
"CO CCCS",
|
1328 |
+
"CO CCSCc",
|
1329 |
+
"CO CCOCCNC",
|
1330 |
+
"Cl CCCSc",
|
1331 |
+
"CCCC CCN",
|
1332 |
+
"CCCC SC",
|
1333 |
+
"CCCC OCc",
|
1334 |
+
"CCO CCOCC",
|
1335 |
+
"CCO CCCn",
|
1336 |
+
"nn ccc",
|
1337 |
+
"-]) \\",
|
1338 |
+
"+]( /",
|
1339 |
+
"+]( /[",
|
1340 |
+
"CS CCCC",
|
1341 |
+
"CS CCOC",
|
1342 |
+
"CS CCCNc",
|
1343 |
+
"Br CC",
|
1344 |
+
"Br CCC",
|
1345 |
+
"12 3",
|
1346 |
+
"CCCCC OC",
|
1347 |
+
"CCCCC Oc",
|
1348 |
+
"CCCCC Sc",
|
1349 |
+
"CCOCC Sc",
|
1350 |
+
"CCS CCOc",
|
1351 |
+
"NN N",
|
1352 |
+
"NCCC SC",
|
1353 |
+
"CCCCN S",
|
1354 |
+
"COCCN Cc",
|
1355 |
+
"OCCC Nc",
|
1356 |
+
"OCCC SC",
|
1357 |
+
"NO CCc",
|
1358 |
+
"COCCO CCN",
|
1359 |
+
"NCCO CCO",
|
1360 |
+
"CCOCCO CCOCC",
|
1361 |
+
"OCCOCCOCCO CCO"
|
1362 |
+
]
|
1363 |
+
}
|
1364 |
+
}
|
tokenizer_config.json
ADDED
@@ -0,0 +1,65 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"add_prefix_space": false,
|
3 |
+
"bos_token": {
|
4 |
+
"__type": "AddedToken",
|
5 |
+
"content": "<s>",
|
6 |
+
"lstrip": false,
|
7 |
+
"normalized": true,
|
8 |
+
"rstrip": false,
|
9 |
+
"single_word": false
|
10 |
+
},
|
11 |
+
"clean_up_tokenization_spaces": true,
|
12 |
+
"cls_token": {
|
13 |
+
"__type": "AddedToken",
|
14 |
+
"content": "<s>",
|
15 |
+
"lstrip": false,
|
16 |
+
"normalized": true,
|
17 |
+
"rstrip": false,
|
18 |
+
"single_word": false
|
19 |
+
},
|
20 |
+
"eos_token": {
|
21 |
+
"__type": "AddedToken",
|
22 |
+
"content": "</s>",
|
23 |
+
"lstrip": false,
|
24 |
+
"normalized": true,
|
25 |
+
"rstrip": false,
|
26 |
+
"single_word": false
|
27 |
+
},
|
28 |
+
"errors": "replace",
|
29 |
+
"mask_token": {
|
30 |
+
"__type": "AddedToken",
|
31 |
+
"content": "<mask>",
|
32 |
+
"lstrip": true,
|
33 |
+
"normalized": true,
|
34 |
+
"rstrip": false,
|
35 |
+
"single_word": false
|
36 |
+
},
|
37 |
+
"max_len": 512,
|
38 |
+
"model_max_length": 512,
|
39 |
+
"pad_token": {
|
40 |
+
"__type": "AddedToken",
|
41 |
+
"content": "<pad>",
|
42 |
+
"lstrip": false,
|
43 |
+
"normalized": true,
|
44 |
+
"rstrip": false,
|
45 |
+
"single_word": false
|
46 |
+
},
|
47 |
+
"sep_token": {
|
48 |
+
"__type": "AddedToken",
|
49 |
+
"content": "</s>",
|
50 |
+
"lstrip": false,
|
51 |
+
"normalized": true,
|
52 |
+
"rstrip": false,
|
53 |
+
"single_word": false
|
54 |
+
},
|
55 |
+
"tokenizer_class": "RobertaTokenizer",
|
56 |
+
"trim_offsets": true,
|
57 |
+
"unk_token": {
|
58 |
+
"__type": "AddedToken",
|
59 |
+
"content": "<unk>",
|
60 |
+
"lstrip": false,
|
61 |
+
"normalized": true,
|
62 |
+
"rstrip": false,
|
63 |
+
"single_word": false
|
64 |
+
}
|
65 |
+
}
|
training_args.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b7fd2af4d8b53434c6cad45b54ddc01ed1261cc12b44ec4a817b68144ffd6f49
|
3 |
+
size 4027
|
vocab.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
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