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from typing import Callable, List, Optional, Tuple, Union |
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import numpy as np |
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import torch |
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import torch.utils.checkpoint |
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from torch import nn |
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from torch.nn import CrossEntropyLoss |
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from transformers.activations import ACT2FN |
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from transformers.generation.configuration_utils import GenerationConfig |
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from transformers.generation.logits_process import LogitsProcessorList |
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from transformers.generation.stopping_criteria import StoppingCriteriaList |
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from transformers.generation.streamers import BaseStreamer |
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from transformers.generation.utils import GenerateOutput |
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from transformers.modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast |
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from transformers.modeling_utils import PreTrainedModel |
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from transformers.utils import logging |
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from transformers.utils.model_parallel_utils import assert_device_map, get_device_map |
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from .configuration_progen import ProGenConfig |
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logger = logging.get_logger(__name__) |
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from .structure import StructureTransformer |
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def fixed_pos_embedding(x, seq_dim=1, seq_len=None): |
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dim = x.shape[-1] |
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if seq_len is None: |
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seq_len = x.shape[seq_dim] |
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inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2) / dim)) |
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sinusoid_inp = torch.einsum("i , j -> i j", torch.arange(seq_len), inv_freq).to(x.device).float() |
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return torch.sin(sinusoid_inp), torch.cos(sinusoid_inp) |
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def rotate_every_two(x): |
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x1 = x[:, :, :, ::2] |
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x2 = x[:, :, :, 1::2] |
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x = torch.stack((-x2, x1), axis=-1) |
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return x.flatten(-2) |
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def apply_rotary_pos_emb(x, sincos, offset=0): |
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sin, cos = map(lambda t: t[None, offset : x.shape[1] + offset, None, :].repeat_interleave(2, 3), sincos) |
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return (x * cos) + (rotate_every_two(x) * sin) |
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class ProGenAttention(nn.Module): |
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def __init__(self, config): |
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super().__init__() |
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max_positions = config.max_position_embeddings |
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self.register_buffer( |
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"bias", |
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torch.tril(torch.ones((max_positions, max_positions), dtype=torch.bool)).view( |
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1, 1, max_positions, max_positions |
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), |
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) |
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self.register_buffer("masked_bias", torch.tensor(-1e9)) |
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self.attn_dropout = nn.Dropout(config.attn_pdrop) |
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self.resid_dropout = nn.Dropout(config.resid_pdrop) |
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self.embed_dim = config.hidden_size |
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self.num_attention_heads = config.num_attention_heads |
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self.head_dim = self.embed_dim // self.num_attention_heads |
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if self.head_dim * self.num_attention_heads != self.embed_dim: |
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raise ValueError( |
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f"embed_dim must be divisible by num_attention_heads (got `embed_dim`: {self.embed_dim} and `num_attention_heads`: {self.num_attention_heads})." |
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) |
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self.scale_attn = torch.sqrt(torch.tensor(self.head_dim, dtype=torch.float32)).to(torch.get_default_dtype()) |
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self.qkv_proj = nn.Linear(self.embed_dim, self.embed_dim * 3, bias=False) |
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self.out_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=False) |
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self.rotary_dim = None |
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if config.rotary_dim is not None: |
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self.rotary_dim = config.rotary_dim |
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def _split_heads(self, x, n_head, dim_head, mp_num): |
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reshaped = x.reshape(x.shape[:-1] + (n_head//mp_num, dim_head)) |
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reshaped = reshaped.reshape(x.shape[:-2] + (-1, ) + reshaped.shape[-1:]) |
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return reshaped |
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def _merge_heads(self, tensor, num_attention_heads, attn_head_size): |
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""" |
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Merges attn_head_size dim and num_attn_heads dim into n_ctx |
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""" |
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if len(tensor.shape) == 5: |
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tensor = tensor.permute(0, 1, 3, 2, 4).contiguous() |
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elif len(tensor.shape) == 4: |
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tensor = tensor.permute(0, 2, 1, 3).contiguous() |
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else: |
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raise ValueError(f"Input tensor rank should be one of [4, 5], but is: {len(tensor.shape)}") |
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new_shape = tensor.size()[:-2] + (num_attention_heads * attn_head_size,) |
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return tensor.view(new_shape) |
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def _attn( |
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self, |
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query, |
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key, |
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value, |
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attention_mask=None, |
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head_mask=None, |
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): |
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query_length, key_length = query.size(-2), key.size(-2) |
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causal_mask = self.bias[:, :, key_length - query_length : key_length, :key_length] |
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query = query.to(torch.float32) |
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key = key.to(torch.float32) |
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attn_weights = torch.matmul(query, key.transpose(-1, -2)) |
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attn_weights = attn_weights / self.scale_attn |
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attn_weights = torch.where(causal_mask, attn_weights, self.masked_bias.to(attn_weights.dtype)) |
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if attention_mask is not None: |
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attn_weights = attn_weights + attention_mask |
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attn_weights = nn.Softmax(dim=-1)(attn_weights) |
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attn_weights = attn_weights.to(value.dtype) |
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attn_weights = self.attn_dropout(attn_weights) |
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if head_mask is not None: |
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attn_weights = attn_weights * head_mask |
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attn_output = torch.matmul(attn_weights, value) |
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return attn_output, attn_weights |
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def forward( |
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self, |
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hidden_states, |
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attention_mask=None, |
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layer_past=None, |
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head_mask=None, |
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use_cache=False, |
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output_attentions=False, |
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): |
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qkv = self.qkv_proj(hidden_states) |
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mp_num = 8 |
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qkv_split = qkv.reshape(qkv.shape[:-1] + (mp_num, -1)) |
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local_dim = self.head_dim * self.num_attention_heads // mp_num |
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query, value, key = torch.split(qkv_split, local_dim, dim=-1) |
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query = self._split_heads(query, self.num_attention_heads, self.head_dim, mp_num=mp_num) |
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key = self._split_heads(key, self.num_attention_heads, self.head_dim, mp_num=mp_num) |
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value = self._split_heads(value, self.num_attention_heads, self.head_dim, mp_num=mp_num) |
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value = value.permute(0, 2, 1, 3) |
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seq_len = key.shape[1] |
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offset = 0 |
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if layer_past is not None: |
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offset = layer_past[0].shape[-2] |
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seq_len += offset |
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if self.rotary_dim is not None: |
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k_rot = key[:, :, :, : self.rotary_dim] |
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k_pass = key[:, :, :, self.rotary_dim :] |
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q_rot = query[:, :, :, : self.rotary_dim] |
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q_pass = query[:, :, :, self.rotary_dim :] |
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sincos = fixed_pos_embedding(k_rot, 1, seq_len=seq_len) |
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k_rot = apply_rotary_pos_emb(k_rot, sincos, offset=offset) |
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q_rot = apply_rotary_pos_emb(q_rot, sincos, offset=offset) |
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key = torch.cat([k_rot, k_pass], dim=-1) |
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query = torch.cat([q_rot, q_pass], dim=-1) |
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else: |
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sincos = fixed_pos_embedding(key, 1, seq_len=seq_len) |
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key = apply_rotary_pos_emb(key, sincos, offset=offset) |
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query = apply_rotary_pos_emb(query, sincos, offset=offset) |
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key = key.permute(0, 2, 1, 3) |
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query = query.permute(0, 2, 1, 3) |
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if layer_past is not None: |
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past_key = layer_past[0] |
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past_value = layer_past[1] |
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key = torch.cat((past_key, key), dim=-2) |
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value = torch.cat((past_value, value), dim=-2) |
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if use_cache is True: |
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present = (key, value) |
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else: |
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present = None |
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attn_output, attn_weights = self._attn(query, key, value, attention_mask, head_mask) |
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attn_output = self._merge_heads(attn_output, self.num_attention_heads, self.head_dim) |
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attn_output = self.out_proj(attn_output) |
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attn_output = self.resid_dropout(attn_output) |
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outputs = (attn_output, present) |
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if output_attentions: |
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outputs += (attn_weights,) |
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return outputs |
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class ProGenMLP(nn.Module): |
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def __init__(self, intermediate_size, config): |
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super().__init__() |
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embed_dim = config.n_embd |
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self.fc_in = nn.Linear(embed_dim, intermediate_size) |
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self.fc_out = nn.Linear(intermediate_size, embed_dim) |
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self.act = ACT2FN[config.activation_function] |
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self.dropout = nn.Dropout(config.resid_pdrop) |
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def forward(self, hidden_states): |
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hidden_states = self.fc_in(hidden_states) |
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hidden_states = self.act(hidden_states) |
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hidden_states = self.fc_out(hidden_states) |
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hidden_states = self.dropout(hidden_states) |
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return hidden_states |
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class ProGenBlock(nn.Module): |
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def __init__(self, config): |
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super().__init__() |
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inner_dim = config.n_inner if config.n_inner is not None else 4 * config.n_embd |
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self.ln_1 = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon) |
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self.attn = ProGenAttention(config) |
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self.mlp = ProGenMLP(inner_dim, config) |
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def forward( |
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self, |
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hidden_states, |
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layer_past=None, |
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attention_mask=None, |
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head_mask=None, |
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use_cache=False, |
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output_attentions=False, |
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): |
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residual = hidden_states |
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hidden_states = self.ln_1(hidden_states) |
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attn_outputs = self.attn( |
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hidden_states, |
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layer_past=layer_past, |
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attention_mask=attention_mask, |
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head_mask=head_mask, |
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use_cache=use_cache, |
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output_attentions=output_attentions, |
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) |
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attn_output = attn_outputs[0] |
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outputs = attn_outputs[1:] |
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feed_forward_hidden_states = self.mlp(hidden_states) |
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hidden_states = attn_output + feed_forward_hidden_states + residual |
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if use_cache: |
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outputs = (hidden_states,) + outputs |
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else: |
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outputs = (hidden_states,) + outputs[1:] |
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return outputs |
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class ProGenPreTrainedModel(PreTrainedModel): |
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""" |
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An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained |
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models. |
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""" |
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config_class = ProGenConfig |
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base_model_prefix = "transformer" |
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supports_gradient_checkpointing = True |
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is_parallelizable = True |
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def __init__(self, *inputs, **kwargs): |
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super().__init__(*inputs, **kwargs) |
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def _init_weights(self, module): |
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"""Initialize the weights.""" |
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if isinstance(module, (nn.Linear,)): |
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module.weight.data.normal_(mean=0.0, std=self.config.initializer_range) |
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if module.bias is not None: |
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module.bias.data.zero_() |
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elif isinstance(module, nn.Embedding): |
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module.weight.data.normal_(mean=0.0, std=self.config.initializer_range) |
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if module.padding_idx is not None: |
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module.weight.data[module.padding_idx].zero_() |
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elif isinstance(module, nn.LayerNorm): |
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module.bias.data.zero_() |
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module.weight.data.fill_(1.0) |
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def _set_gradient_checkpointing(self, module, value=False): |
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if isinstance(module, ProGenModel): |
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module.gradient_checkpointing = value |
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class ProGenModel(ProGenPreTrainedModel): |
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def __init__(self, config): |
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super().__init__(config) |
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self.embed_dim = config.n_embd |
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self.vocab_size = config.vocab_size |
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self.wte = nn.Embedding(config.vocab_size, self.embed_dim) |
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self.drop = nn.Dropout(config.embd_pdrop) |
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self.h = nn.ModuleList([ProGenBlock(config) for _ in range(config.n_layer)]) |
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self.ln_f = nn.LayerNorm(self.embed_dim, eps=config.layer_norm_epsilon) |
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self.rotary_dim = min(config.rotary_dim, config.n_ctx // config.num_attention_heads) |
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self.gradient_checkpointing = False |
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self.structure = StructureTransformer(**config.structure) |
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self.init_weights() |
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self.model_parallel = False |
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self.device_map = None |
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def parallelize(self, device_map=None): |
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self.device_map = ( |
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get_device_map(len(self.h), range(torch.cuda.device_count())) if device_map is None else device_map |
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) |
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assert_device_map(self.device_map, len(self.h)) |
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self.model_parallel = True |
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self.first_device = "cpu" if "cpu" in self.device_map.keys() else "cuda:" + str(min(self.device_map.keys())) |
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self.last_device = "cuda:" + str(max(self.device_map.keys())) |
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self.wte = self.wte.to(self.first_device) |
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for k, v in self.device_map.items(): |
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for block in v: |
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cuda_device = "cuda:" + str(k) |
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self.h[block] = self.h[block].to(cuda_device) |
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self.ln_f = self.ln_f.to(self.last_device) |
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def deparallelize(self): |
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self.model_parallel = False |
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self.device_map = None |
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self.first_device = "cpu" |
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self.last_device = "cpu" |
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self.wte = self.wte.to("cpu") |
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for index in range(len(self.h)): |
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self.h[index] = self.h[index].to("cpu") |
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self.ln_f = self.ln_f.to("cpu") |
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torch.cuda.empty_cache() |
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def get_input_embeddings(self): |
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return self.wte |
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def set_input_embeddings(self, new_embeddings): |
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self.wte = new_embeddings |
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def forward( |
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self, |
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input_ids=None, |
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past_key_values=None, |
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attention_mask=None, |
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token_type_ids=None, |
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position_ids=None, |
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head_mask=None, |
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inputs_embeds=None, |
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query_embeds=None, |
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use_cache=None, |
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output_attentions=None, |
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output_hidden_states=None, |
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return_dict=None, |
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): |
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if past_key_values is None: |
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structure_embs = self.structure.encode(input_ids) |
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if structure_embs is not None: |
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input_ids = input_ids[:, self.structure.n_queries:] |
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else: |
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structure_embs = None |
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output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions |
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output_hidden_states = ( |
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output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states |
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) |
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use_cache = use_cache if use_cache is not None else self.config.use_cache |
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return_dict = return_dict if return_dict is not None else self.config.use_return_dict |
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if input_ids is not None and inputs_embeds is not None: |
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raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time") |
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elif input_ids is not None: |
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input_shape = input_ids.size() |
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input_ids = input_ids.view(-1, input_shape[-1]) |
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batch_size = input_ids.shape[0] |
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elif inputs_embeds is not None: |
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input_shape = inputs_embeds.size()[:-1] |
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batch_size = inputs_embeds.shape[0] |
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else: |
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raise ValueError("You have to specify either input_ids or inputs_embeds") |
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device = input_ids.device if input_ids is not None else inputs_embeds.device |
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if position_ids is not None: |
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position_ids = position_ids.view(-1, input_shape[-1]) |
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if past_key_values is None: |
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past_length = 0 |
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past_key_values = tuple([None] * len(self.h)) |
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else: |
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past_length = past_key_values[0][0].size(-2) |
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if position_ids is None: |
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position_ids = torch.arange(past_length, input_shape[-1] + past_length, dtype=torch.long, device=device) |
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position_ids = position_ids.unsqueeze(0).view(-1, input_shape[-1]) |
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if attention_mask is not None: |
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assert batch_size > 0, "batch_size has to be defined and > 0" |
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attention_mask = attention_mask.view(batch_size, -1) |
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attention_mask = attention_mask[:, None, None, :] |
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attention_mask = attention_mask.to(dtype=self.dtype) |
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attention_mask = (1.0 - attention_mask) * -10000.0 |
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head_mask = self.get_head_mask(head_mask, self.config.n_layer) |
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if inputs_embeds is None: |
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inputs_embeds = self.wte(input_ids) |
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if query_embeds is not None: |
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inputs_embeds = torch.cat([query_embeds, inputs_embeds], dim=1) |
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input_shape = inputs_embeds.size()[:-1] |
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if structure_embs is not None: |
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inputs_embeds = torch.cat([structure_embs, inputs_embeds], dim=1) |
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input_shape = inputs_embeds.size()[:-1] |
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hidden_states = inputs_embeds |
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hidden_states = self.drop(hidden_states) |
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output_shape = input_shape + (hidden_states.size(-1),) |
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presents = () if use_cache else None |
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all_self_attentions = () if output_attentions else None |
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all_hidden_states = () if output_hidden_states else None |
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for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)): |
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if self.model_parallel: |
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torch.cuda.set_device(hidden_states.device) |
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if layer_past is not None: |
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layer_past = tuple(past_state.to(hidden_states.device) for past_state in layer_past) |
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if attention_mask is not None: |
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attention_mask = attention_mask.to(hidden_states.device) |
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if isinstance(head_mask, torch.Tensor): |
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head_mask = head_mask.to(hidden_states.device) |
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if output_hidden_states: |
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all_hidden_states = all_hidden_states + (hidden_states,) |
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if self.gradient_checkpointing and self.training: |
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if use_cache: |
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use_cache = False |
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def create_custom_forward(module): |
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def custom_forward(*inputs): |
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return module(*inputs, use_cache, output_attentions) |
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return custom_forward |
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outputs = torch.utils.checkpoint.checkpoint( |
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create_custom_forward(block), |
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hidden_states, |
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None, |
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attention_mask, |
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head_mask[i], |
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) |
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else: |
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outputs = block( |
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hidden_states, |
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layer_past=layer_past, |
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attention_mask=attention_mask, |
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head_mask=head_mask[i], |
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use_cache=use_cache, |
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output_attentions=output_attentions, |
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) |
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hidden_states = outputs[0] |
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if use_cache is True: |
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presents = presents + (outputs[1],) |
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if output_attentions: |
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all_self_attentions = all_self_attentions + (outputs[2 if use_cache else 1],) |
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if self.model_parallel: |
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for k, v in self.device_map.items(): |
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if i == v[-1] and "cuda:" + str(k) != self.last_device: |
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hidden_states = hidden_states.to("cuda:" + str(k + 1)) |
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hidden_states = self.ln_f(hidden_states) |
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hidden_states = hidden_states.view(*output_shape) |
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if output_hidden_states: |
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all_hidden_states = all_hidden_states + (hidden_states,) |
|
|
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if not return_dict: |
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return tuple(v for v in [hidden_states, presents, all_hidden_states, all_self_attentions] if v is not None) |
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|
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return BaseModelOutputWithPast( |
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last_hidden_state=hidden_states, |
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past_key_values=presents, |
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hidden_states=all_hidden_states, |
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attentions=all_self_attentions, |
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) |
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|
|
|
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class ProGenForCausalLM(ProGenPreTrainedModel): |
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_keys_to_ignore_on_load_missing = [r"h\.\d+\.attn\.masked_bias", r"h\.\d+\.attn\.bias", r"lm_head\.weight"] |
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|
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def __init__(self, config): |
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super().__init__(config) |
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self.transformer = ProGenModel(config) |
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self.lm_head = nn.Linear(config.n_embd, config.vocab_size) |
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self.init_weights() |
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|
|
|
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self.model_parallel = False |
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self.device_map = None |
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|
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def parallelize(self, device_map=None): |
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self.device_map = ( |
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get_device_map(len(self.transformer.h), range(torch.cuda.device_count())) |
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if device_map is None |
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else device_map |
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) |
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assert_device_map(self.device_map, len(self.transformer.h)) |
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self.transformer.parallelize(self.device_map) |
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self.lm_head = self.lm_head.to(self.transformer.first_device) |
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self.model_parallel = True |
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|
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def deparallelize(self): |
|
self.transformer.deparallelize() |
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self.transformer = self.transformer.to("cpu") |
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self.lm_head = self.lm_head.to("cpu") |
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self.model_parallel = False |
|
torch.cuda.empty_cache() |
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|
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def get_output_embeddings(self): |
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return self.lm_head |
|
|
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def set_output_embeddings(self, new_embeddings): |
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self.lm_head = new_embeddings |
|
|
|
def prepare_inputs_for_generation( |
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self, input_ids, past_key_values=None, attention_mask=None, inputs_embeds=None, **kwargs |
|
): |
|
if past_key_values: |
|
input_ids = input_ids[:, -1:] |
|
|
|
|
|
if inputs_embeds is not None and past_key_values is None: |
|
model_inputs = {"inputs_embeds": inputs_embeds} |
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else: |
|
model_inputs = {"input_ids": input_ids} |
|
|
|
model_inputs.update( |
|
{ |
|
"past_key_values": past_key_values, |
|
"use_cache": kwargs.get("use_cache"), |
|
"attention_mask": attention_mask, |
|
} |
|
) |
|
return model_inputs |
|
|
|
def forward( |
|
self, |
|
input_ids=None, |
|
past_key_values=None, |
|
attention_mask=None, |
|
token_type_ids=None, |
|
position_ids=None, |
|
head_mask=None, |
|
inputs_embeds=None, |
|
labels=None, |
|
use_cache=None, |
|
query_embeds = None, |
|
output_attentions=None, |
|
output_hidden_states=None, |
|
return_dict=None, |
|
): |
|
r""" |
|
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`): |
|
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set |
|
``labels = input_ids`` Indices are selected in ``[-100, 0, ..., config.vocab_size]`` All labels set to |
|
``-100`` are ignored (masked), the loss is only computed for labels in ``[0, ..., config.vocab_size]`` |
|
""" |
|
return_dict = return_dict if return_dict is not None else self.config.use_return_dict |
|
|
|
transformer_outputs = self.transformer( |
|
input_ids, |
|
past_key_values=past_key_values, |
|
attention_mask=attention_mask, |
|
token_type_ids=token_type_ids, |
|
position_ids=position_ids, |
|
head_mask=head_mask, |
|
inputs_embeds=inputs_embeds, |
|
query_embeds=query_embeds, |
|
use_cache=use_cache, |
|
output_attentions=output_attentions, |
|
output_hidden_states=output_hidden_states, |
|
return_dict=return_dict, |
|
) |
|
hidden_states = transformer_outputs[0] |
|
|
|
|
|
if self.model_parallel: |
|
torch.cuda.set_device(self.transformer.first_device) |
|
hidden_states = hidden_states.to(self.lm_head.weight.device) |
|
|
|
|
|
|
|
|
|
lm_logits = self.lm_head(hidden_states).to(torch.float32) |
|
|
|
loss = None |
|
if labels is not None: |
|
|
|
shift_logits = lm_logits[..., :-1, :].contiguous() |
|
shift_labels = labels[..., 1:].contiguous() |
|
|
|
loss_fct = CrossEntropyLoss() |
|
loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1)) |
|
|
|
loss = loss.to(hidden_states.dtype) |
|
|
|
if not return_dict: |
|
output = (lm_logits,) + transformer_outputs[1:] |
|
return ((loss,) + output) if loss is not None else output |
|
|
|
return CausalLMOutputWithPast( |
|
loss=loss, |
|
logits=lm_logits, |
|
past_key_values=transformer_outputs.past_key_values, |
|
hidden_states=transformer_outputs.hidden_states, |
|
attentions=transformer_outputs.attentions, |
|
) |
|
|
|
@staticmethod |
|
def _reorder_cache(past: Tuple[Tuple[torch.Tensor]], beam_idx: torch.Tensor) -> Tuple[Tuple[torch.Tensor]]: |
|
""" |
|
This function is used to re-order the :obj:`past_key_values` cache if |
|
:meth:`~transformers.PretrainedModel.beam_search` or :meth:`~transformers.PretrainedModel.beam_sample` is |
|
called. This is required to match :obj:`past_key_values` with the correct beam_idx at every generation step. |
|
""" |
|
return tuple( |
|
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past) |
|
for layer_past in past |
|
) |
|
|
|
|
|
|