Spacy Entity Linker

Introduction

Spacy Entity Linker is a pipeline for spaCy that performs Linked Entity Extraction with Wikidata on a given Document. The Entity Linking System operates by matching potential candidates from each sentence (subject, object, prepositional phrase, compounds, etc.) to aliases from Wikidata. The package allows to easily find the category behind each entity (e.g. "banana" is type "food" OR "Microsoft" is type "company"). It can is therefore useful for information extraction tasks and labeling tasks.

The package was written before a working Linked Entity Solution existed inside spaCy. In comparison to spaCy's linked entity system, it has the following advantages:

no extensive training required (entity-matching via database)
knowledge base can be dynamically updated without retraining
entity categories can be easily resolved
grouping entities by category

It also comes along with a number of disadvantages:

it is slower than the spaCy implementation due to the use of a database for finding entities
no context sensitivity due to the implementation of the "max-prior method" for entitiy disambiguation (an improved method for this is in progress)

Use

import spacy  # version 3.0.6'

# initialize language model
nlp = spacy.load("en_core_web_md")

# add pipeline (declared through entry_points in setup.py)
nlp.add_pipe("entityLinker", last=True)

doc = nlp("I watched the Pirates of the Caribbean last silvester")

# returns all entities in the whole document
all_linked_entities = doc._.linkedEntities
# iterates over sentences and prints linked entities
for sent in doc.sents:
    sent._.linkedEntities.pretty_print()

# OUTPUT:
# https://www.wikidata.org/wiki/Q194318     Pirates of the Caribbean        Series of fantasy adventure films                                                                   
# https://www.wikidata.org/wiki/Q12525597   Silvester                       the day celebrated on 31 December (Roman Catholic Church) or 2 January (Eastern Orthodox Churches)

EntityCollection

contains an array of entity elements. It can be accessed like an array but also implements the following helper functions:

pretty_print() prints out information about all contained entities
print_super_classes() groups and prints all entites by their super class

doc = nlp("Elon Musk was born in South Africa. Bill Gates and Steve Jobs come from the United States")
doc._.linkedEntities.print_super_entities()
# OUTPUT:
# human (3) : Elon Musk,Bill Gates,Steve Jobs
# country (2) : South Africa,United States of America
# sovereign state (2) : South Africa,United States of America
# federal state (1) : United States of America
# constitutional republic (1) : United States of America
# democratic republic (1) : United States of America

EntityElement

each linked Entity is an object of type EntityElement. Each entity contains the methods

get_description() returns description from Wikidata
get_id() returns Wikidata ID
get_label() returns Wikidata label
get_span() returns the span from the spacy document that contains the linked entity
get_url() returns the url to the corresponding Wikidata item
pretty_print() prints out information about the entity element
get_sub_entities(limit=10) returns EntityCollection of all entities that derive from the current entityElement (e.g. fruit -> apple, banana, etc.)
get_super_entities(limit=10) returns EntityCollection of all entities that the current entityElement derives from (e.g. New England Patriots -> Football Team))

Example

In the following example we will use SpacyEntityLinker to find find the mentioned Football Team in our text and explore other football teams of the same type


doc = nlp("I follow the New England Patriots")

patriots_entity = doc._.linkedEntities[0]
patriots_entity.pretty_print()
# OUTPUT:
# https://www.wikidata.org/wiki/Q193390     
# New England Patriots            
# National Football League franchise in Foxborough, Massachusetts                    

football_team_entity = patriots_entity.get_super_entities()[0]
football_team_entity.pretty_print()
# OUTPUT:
# https://www.wikidata.org/wiki/Q17156793 
# American football team          
# organization, in which a group of players are organized to compete as a team in American football   


for child in football_team_entity.get_sub_entities(limit=32):
    print(child)
    # OUTPUT:
    # New Orleans Saints
    # New York Giants
    # Pittsburgh Steelers
    # New England Patriots
    # Indianapolis Colts
    # Miami Seahawks
    # Dallas Cowboys
    # Chicago Bears
    # Washington Redskins
    # Green Bay Packers
    # ...

Entity Linking Policy

Currently the only method for choosing an entity given different possible matches (e.g. Paris - city vs Paris - firstname) is max-prior. This method achieves around 70% accuracy on predicting the correct entities behind link descriptions on wikipedia.

Note

The Entity Linker at the current state is still experimental and should not be used in production mode.

Performance

The current implementation supports only Sqlite. This is advantageous for development because it does not requirement any special setup and configuration. However, for more performance critical usecases, a different database with in-memory access (e.g. Redis) should be used. This may be implemented in the future.

Installation

To install the package run: pip install spacy-entity-linker

Afterwards, the knowledge base (Wikidata) must be downloaded. This can be done by calling

python -m spacy_entity_linker "download_knowledge_base"

This will download and extract a ~500mb file that contains a preprocessed version of Wikidata

Data

the knowledge base was derived from this dataset: https://www.kaggle.com/kenshoresearch/kensho-derived-wikimedia-data

It was cleaned and post-procesed, including filtering out entities of "overrepresented" categories such as

village in China
train stations
stars in the Galaxy
etc.

The purpose behind the knowledge base cleaning was to reduce the knowledge base size, while keeping the most useful entities for general purpose applications.

Currently, the only way to change the knowledge base is a bit hacky and requires to replace or modify the underlying sqlite database. You will find it under site_packages/data_spacy_entity_linker/wikidb_filtered.db. The database contains 3 tables:

aliases
- en_alias (english alias)
- en_alias_lowercase (english alias lowercased)
joined
- en_label (label of the wikidata item)
- views (number of views of the corresponding wikipedia page (in a given period of time))
- inlinks (number of inlinks to the corresponding wikipedia page)
- item_id (wikidata id)
- description (description of the wikidata item)
statements
- source_item_id (references item_id)
- target_item_id (references item_id)
- edge_property_id
  - 279=subclass of (https://www.wikidata.org/wiki/Property:P279)
  - 31=instance of (https://www.wikidata.org/wiki/Property:P31)
  - 361=part of (https://www.wikidata.org/wiki/Property:P361)

Versions:

spacy_entity_linker>=0.0 (requires spacy>=2.2,<3.0)
spacy_entity_linker>=1.0 (requires spacy>=3.0)

TODO

implement Entity Classifier based on sentence embeddings for improved accuracy
implement get_picture_urls() on EntityElement
retrieve statements for each EntityElement (inlinks + outlinks)