Hugging Face's logo
Christina Theodoris's picture
444

Christina Theodoris

ctheodoris
Jemseen's profile picture adRn-s's profile picture Diandian-ops's profile picture
·

AI & ML interests

None yet

Recent Activity

New activity about 19 hours ago
ctheodoris/Geneformer:AssertionError of extracts embedding from input data
New activity 2 days ago
ctheodoris/Geneformer:CRC results reproducibility
New activity 2 days ago
ctheodoris/Geneformer:Code problem: Where is the code for tokenizing in the preprocessing of pre-training data?
View all activity

Organizations

Theodoris Lab's profile picture

ctheodoris's activity

New activity in ctheodoris/Geneformer about 19 hours ago

AssertionError of extracts embedding from input data

4
#435 opened about 1 month ago by yuexiafx
New activity in ctheodoris/Geneformer 2 days ago

CRC results reproducibility

1
#456 opened 2 days ago by lurcelay

Code problem: Where is the code for tokenizing in the preprocessing of pre-training data?

1
#455 opened 2 days ago by hanshieki
New activity in ctheodoris/Geneformer 3 days ago

How to Directly Obtain Gene and Cell Embedding Changes Without Predefined Cell States?

3
#454 opened 4 days ago by HarryShen666
New activity in ctheodoris/Geneformer 6 days ago

Update geneformer/emb_extractor.py
#453 opened 6 days ago by hchen725

Consistency of perturbation analysis results

2
#433 opened about 1 month ago by juginst

Possible bug in tokenizer (No objects to concatenate)

1
#449 opened 14 days ago by Arkimond9620

Update geneformer/tokenizer.py
#450 opened 13 days ago by hchen725

Disagreement between 30M and 95M cell state perturbation results

4
#451 opened 8 days ago by ZYSK-huggingface

Disagreement between 30M and 95M cell state perturbation results

1
#452 opened 6 days ago by ZYSK-huggingface
New activity in ctheodoris/Geneformer 15 days ago

Adding tags to the model

1
#448 opened 15 days ago by canergen
New activity in ctheodoris/Geneformer 17 days ago

Questions about the train/validation/test/new data

1
#444 opened 24 days ago by Napert

multitask_cell_classification vs cell_classification pipeline

1
#445 opened 24 days ago by Napert
New activity in ctheodoris/Geneformer 29 days ago

Pre-trained embedded value extraction

1
#440 opened about 1 month ago by babykai

Use Geneformer to predict cell types

1
#441 opened 30 days ago by jkobject
New activity in ctheodoris/Geneformer about 1 month ago

Can genes filtered before cell_state perturbation?

7
#439 opened about 1 month ago by ZYSK-huggingface

how state embed characterized in cell state mode and how to performe vs null mode

1
#438 opened about 1 month ago by ZYSK-huggingface

Errors of InSilicoPerturberStats

5
#436 opened about 1 month ago by ZYSK-huggingface

Error for large dataset tokenization in create_dataset

1
#437 opened about 1 month ago by elinor-med

Problems of get_state_embed

4
#434 opened about 1 month ago by ZYSK-huggingface