id
stringlengths 6
15
| sequence
stringlengths 1
457k
| name
stringlengths 6
15
| description
stringlengths 44
1.6k
| features
int64 0
0
| seq_length
int64 1
457k
|
|---|---|---|---|---|---|
5KW1_C | nnnnnnnnnnnnnnnnnnnnnnnnnnnnnn | 5KW1_C | 5KW1_C Chain C, DNA/RNA (30-MER). [unidentified adenovirus | 10535.961] | 0 | 30 |
5Z56_G | gggaatacacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgcgtacaccatcagggtacgtactagtacgtacaccatcagggtacggctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacggctcgcggttgaggacaaactcttcgcggtctttccagtggggatcc | 5Z56_G | 5Z56_G cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. [unidentified adenovirus | 10535.4] | 0 | 274 |
5Z56_G | gggaatacacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgcgtacaccatcagggtacgtactagtacgtacaccatcagggtacggctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacggctcgcggttgaggacaaactcttcgcggtctttccagtggggatcc | 5Z56_G | 5Z56_G cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. [unidentified adenovirus | 10535.5] | 0 | 274 |
5Z56_G | gggaatacacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgcgtacaccatcagggtacgtactagtacgtacaccatcagggtacggctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacggctcgcggttgaggacaaactcttcgcggtctttccagtggggatcc | 5Z56_G | 5Z56_G cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. [unidentified adenovirus | 10535.6] | 0 | 274 |
5Z57_G | gggaatacacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgcgtacaccatcagggtacgtactagtacgtacaccatcagggtacggctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacggctcgcggttgaggacaaactcttcgcggtctttccagtggggatcc | 5Z57_G | 5Z57_G Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom. [unidentified adenovirus | 10535.7] | 0 | 274 |
5Z58_G | gggaatacacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgcgtacaccatcagggtacgtactagtacgtacaccatcagggtacggctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacggctcgcggttgaggacaaactcttcgcggtctttccagtggggatcc | 5Z58_G | 5Z58_G Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. [unidentified adenovirus | 10535.8] | 0 | 274 |
6FBS_D | acaataaagg | 6FBS_D | 6FBS_D Cryo-EM structure of the human CPSF160-WDR33-CPSF30 complex bound to the PAS AAUAAA motif at 3.1 Angstrom resolution. [unidentified adenovirus | 10535.9] | 0 | 10 |
6FUW_D | acaataaagg | 6FUW_D | 6FUW_D Cryo-EM structure of the human CPSF160-WDR33-CPSF30 complex bound to the PAS AAUAAA motif at 3.1 Angstrom resolution. [unidentified adenovirus | 10535.10] | 0 | 10 |
6OL3_C | ngacctcgcaagggtatcatggcggacgaccggggttcgaaccccggatccggccgtccgccgtgatccatgcggttaccgcccgcgtgtcgaacccaggtgtgcgaggtcc | 6OL3_C | 6OL3_C Crystal structure of an adenovirus virus-associated RNA. [Human adenovirus 2 | 10515.6] | 0 | 112 |
6QDV_E | ngcctccgaacgct | 6QDV_E | 6QDV_E Human post-catalytic P complex spliceosome. [Human adenovirus 2 | 10515.7] | 0 | 14 |
6QDV_I | ntaagagcctagcatgtagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgatgatgtcatacttatcctnnnnnnnnncag | 6QDV_I | 6QDV_I Human post-catalytic P complex spliceosome. [Human adenovirus 2 | 10515.8] | 0 | 113 |
6QHD_C | aagatttacgggaaatgc | 6QHD_C | 6QHD_C Lysine acetylated and tyrosine phosphorylated STAT3 in a complex with DNA. [Murine adenovirus 1 | 10530.3] | 0 | 18 |
6QHD_D | tgcatttcccgtaaatct | 6QHD_D | 6QHD_D Lysine acetylated and tyrosine phosphorylated STAT3 in a complex with DNA. [Murine adenovirus 1 | 10530.4] | 0 | 18 |
6QX9_I | gggtgagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttcgtgctgacc | 6QX9_I | 6QX9_I Chain I, AdML pre-mRNA. [Human adenovirus 2 | 10515.994] | 0 | 62 |
7NVR_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVR_N | 7NVR_N Chain N, NT. [Human mastadenovirus C | 129951.1386] | 0 | 106 |
7NVR_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVR_T | 7NVR_T Chain T, TEMPLATE. [Human mastadenovirus C | 129951.1385] | 0 | 106 |
7NVS_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVS_N | 7NVS_N Chain N, Non-template DNA. [unidentified adenovirus | 10535.933] | 0 | 106 |
7NVS_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVS_T | 7NVS_T Chain T, Template DNA. [unidentified adenovirus | 10535.932] | 0 | 106 |
7NVT_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVT_N | 7NVT_N Chain N, Non-Template DNA. [Human mastadenovirus C | 129951.1383] | 0 | 106 |
7NVT_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVT_T | 7NVT_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1384] | 0 | 106 |
7NVU_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVU_N | 7NVU_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1382] | 0 | 106 |
7NVU_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVU_T | 7NVU_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1381] | 0 | 106 |
7NVV_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVV_N | 7NVV_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1380] | 0 | 106 |
7NVV_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVV_T | 7NVV_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1378] | 0 | 106 |
7NVW_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVW_N | 7NVW_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1379] | 0 | 106 |
7NVW_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVW_T | 7NVW_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1377] | 0 | 106 |
7NVX_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVX_N | 7NVX_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1376] | 0 | 106 |
7NVX_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVX_T | 7NVX_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1374] | 0 | 106 |
7NVY_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVY_N | 7NVY_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1375] | 0 | 106 |
7NVY_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVY_T | 7NVY_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1373] | 0 | 106 |
7NVZ_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NVZ_N | 7NVZ_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1372] | 0 | 106 |
7NVZ_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NVZ_T | 7NVZ_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1371] | 0 | 106 |
7NW0_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgtctgcgagggccagctgttggggtgagtactccct | 7NW0_N | 7NW0_N Chain N, Non-template DNA. [Human mastadenovirus C | 129951.1370] | 0 | 106 |
7NW0_T | agggagtactcaccccaacagctggccctcgcagacagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 7NW0_T | 7NW0_T Chain T, Template DNA. [Human mastadenovirus C | 129951.1369] | 0 | 106 |
7ONB_G | gggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttccacaggtaagttggaagcatgtagaaccttggatccgatatccgtacaccatcagggtacgagctagcccatggcgtacaccatcagggtacgactagtagatctcgtacaccatcagggtacggaattct | 7ONB_G | 7ONB_G Chain G, MINX. [unidentified adenovirus | 10535.931] | 0 | 229 |
7QTT_g | gggagacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttccagtggggatccaatatccgtacaccatcagggtacgagctagcccatggcgtacaccatcagggtacgactagtagatctcgtacaccatcagggtacggaattct | 7QTT_g | 7QTT_g Chain g, MINX. [unidentified adenovirus | 10535.980] | 0 | 319 |
7VPX_I | gggagtgcagtagtccagggtttccttgaagctttcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttcgaacggtaagagcctagcatgtagaaccttgggatccgaatacggtaccatccgatatccgtacaccatcagggtacgagctagcccatggcgtacaccatcagggtacgactagtagatctcgtacaccatcagggtacggaattctctagagtcgag | 7VPX_I | 7VPX_I Chain I, pre-mRNA. [unidentified adenovirus | 10535.982] | 0 | 259 |
7VPX_K | gggtgagtac | 7VPX_K | 7VPX_K Chain K, The cryo-EM structure of the human pre-A complex. [unidentified adenovirus | 10535.983] | 0 | 10 |
7W59_4 | gatcgggctcgccactcttggatcggaacccgtcggcctccgaacg | 7W59_4 | 7W59_4 Chain 4, pre-mRNA. [unidentified adenovirus | 10535.965] | 0 | 46 |
7W59_G | ntaagagcctagcatgtagaactggttacctgcagcccaagcttgctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttccagtggggatccgatatccg | 7W59_G | 7W59_G Chain G, pre-mRNA. [unidentified adenovirus | 10535.966] | 0 | 174 |
7W5A_4 | gatcgggctcgccactcttggatcggaacccgtcggcctccgaacg | 7W5A_4 | 7W5A_4 Chain 4, Pre-mRNA. [unidentified adenovirus | 10535.967] | 0 | 46 |
7W5A_G | ntaagagcctagcatgtagaactggttacctgcagcccaagcttgctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttccagtggggatccgatatccg | 7W5A_G | 7W5A_G Chain G, Pre-mRNA. [unidentified adenovirus | 10535.968] | 0 | 174 |
7W5B_4 | gatcgggctcgccactcttggatcggaacccgtcggcctccgaacg | 7W5B_4 | 7W5B_4 Chain 4, Pre-mRNA. [unidentified adenovirus | 10535.969] | 0 | 46 |
7W5B_G | ntaagagcctagcatgtagaactggttacctgcagcccaagcttgctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttccagtggggatccgatatccg | 7W5B_G | 7W5B_G Chain G, Pre-mRNA. [unidentified adenovirus | 10535.970] | 0 | 174 |
8BVW_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgcatcgctgatcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactccctagtctccaggcacgtgtcagatatatacatccgat | 8BVW_N | 8BVW_N Chain N, Non-template DNA. [unidentified adenovirus | 10535.981] | 0 | 218 |
8BVW_T | atcggatgtatatatctgacacgtgcctggagactagggagtaatccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggattctcgatcagcgatgcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 8BVW_T | 8BVW_T Chain T, Template DNA. [unidentified adenovirus | 10535.985] | 0 | 218 |
8BYQ_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgatcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactccctagtctccaggcacgtgtcagatatatacatccgat | 8BYQ_N | 8BYQ_N Chain N, Non-template DNA. [unidentified adenovirus | 10535.984] | 0 | 210 |
8BYQ_T | atcggatgtatatatctgacacgtgcctggagactagggagtaatccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggattctcgatcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 8BYQ_T | 8BYQ_T Chain T, Template DNA. [unidentified adenovirus | 10535.988] | 0 | 210 |
8BZ1_N | cgggtgttcctgaaggggggctataaaagggggtgggggcgcgttcgtcctcactctcttccgatcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactccctagtctccaggcacgtgtcagatatatacatccgat | 8BZ1_N | 8BZ1_N Chain N, Non-template DNA. [unidentified adenovirus | 10535.987] | 0 | 210 |
8BZ1_T | atcggatgtatatatctgacacgtgcctggagactagggagtaatccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggattctcgatcggaagagagtgaggacgaacgcgcccccacccccttttatagccccccttcaggaacacccg | 8BZ1_T | 8BZ1_T Chain T, Template DNA. [unidentified adenovirus | 10535.986] | 0 | 210 |
8CH6_g | gggagacggaattcgagctcgcccactcttggatcggaaacccgtcggcctccgaacggtaagagcctagcatgtagaactggttacctgcagcccaagcttgctgcacgtctagggcgcagtagtccagggtttccttgatgatgtcatacttatcctgtcccttttttttccacagctcgcggttgaggacaaactcttcgcggtctttccagtggggatccaatatccgtacaccatcagggtacgagctagcccatggcgtacaccatcagggtacgactagtagatctcgtacaccatcagggtacggaattct | 8CH6_g | 8CH6_g Chain g, MINX-M3. [unidentified adenovirus | 10535.989] | 0 | 319 |
A29842 | catcatcaataatatacaggacaaagaggtgtggcttaaatttgggcgttgcaaggggcggggtcatgggacggtcaggttcaggtcacgccctggtcagggtgttcccacgggaatgtccagtgacgtcaaaggcgtggttttacgacagggcgagttccgcggacttttggccggcgcccgggtttttgggcgttgtgcctatttgtggttttgtggttgacagggtgacaaggacgtgctgtactttttgtgaactttccgggccaaccgccaaagggaaactgcacttaacatttaccacgcgcccacaatttatgactgtacttggcaccacttcctcaaacgccccgttatattccttttcgttttccacacgccctactttgaggactatataaacgctgtgcttggcatttcatcctcatagctctcctctgacagccagccgtccgtgagtactatggcagctttaggagtgtctatgggagcatgtttttgtctgaggcttcacaagagtctagtggagagtgtgtgtgctcaactgagacttacgaactttttgccttctgaactcgccgtgtggtgtttagccttattagggcccaggaagtgcgtccgtgtcctaccttgccgcggctgtttcggttta | A29842 | A29842 CAV2 genome right hand terminal region. [Canine adenovirus 2 | 10514.3] | 0 | 652 |
A38410 | cctctagttacctccaatgtgcagctgcag | A38410 | A38410 Sequence 1 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.11] | 0 | 30 |
A38412 | ctctctctggacgaggccgtgcagctgcag | A38412 | A38412 Sequence 3 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.12] | 0 | 30 |
A38414 | cctctcaaaaaaaccaaggtgcagctgcag | A38414 | A38414 Sequence 5 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.14] | 0 | 30 |
A38416 | cccctcacagttacctcagtgcagctgcag | A38416 | A38416 Sequence 7 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.13] | 0 | 30 |
A38418 | cctctaatggtcgcgggcgtgcagctgcag | A38418 | A38418 Sequence 9 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.15] | 0 | 30 |
A38420 | ccgctaaccgtgcacgacgtgcagctgcag | A38420 | A38420 Sequence 11 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.16] | 0 | 30 |
A38422 | cccctcacagtgtcagaagtgcagctgcag | A38422 | A38422 Sequence 13 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.17] | 0 | 30 |
A38424 | ctcaccaccaccgatagcgtgcagctgcag | A38424 | A38424 Sequence 15 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.18] | 0 | 30 |
A38426 | cctctaactactgccactgtgcagctgcag | A38426 | A38426 Sequence 17 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.19] | 0 | 30 |
A38428 | cccatttatacacaaaatgtgcagctgcag | A38428 | A38428 Sequence 19 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.20] | 0 | 30 |
A38430 | catgtaacagacgacctagtgcagctgcag | A38430 | A38430 Sequence 21 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.21] | 0 | 30 |
A38432 | ggtgtgactattaataatgtgcagctgcag | A38432 | A38432 Sequence 23 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.22] | 0 | 30 |
A38434 | ggttttgattcacaaggcgtgcagctgcag | A38434 | A38434 Sequence 25 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.23] | 0 | 30 |
A38436 | aggattgattctcaaaacgtgcagctgcag | A38436 | A38436 Sequence 27 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.24] | 0 | 30 |
A38438 | tttgatgctcaaaaccaagtgcagctgcag | A38438 | A38438 Sequence 29 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.25] | 0 | 30 |
A38440 | ctttttataaactcagccgtgcagctgcag | A38440 | A38440 Sequence 31 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.26] | 0 | 30 |
A38442 | tcaaacaattccaaaaacgtgcagctgcag | A38442 | A38442 Sequence 33 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.27] | 0 | 30 |
A38444 | gggttgatgtttgacgctgtgcagctgcag | A38444 | A38444 Sequence 35 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.28] | 0 | 30 |
A38446 | cctaatgcaccaaacacagtgcagctgcag | A38446 | A38446 Sequence 37 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.29] | 0 | 30 |
A38448 | ctagaatttgattcaaacgtgcagctgcag | A38448 | A38448 Sequence 39 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.30] | 0 | 30 |
A38450 | cttagttttgacagcacagtgcagctgcag | A38450 | A38450 Sequence 41 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.31] | 0 | 30 |
A38452 | attgataagctaactttggtgcagctgcag | A38452 | A38452 Sequence 43 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.32] | 0 | 30 |
A38454 | ctcgagtaataagaattc | A38454 | A38454 Sequence 45 from Patent WO9410323. [unidentified adenovirus AD5 | 10535.33] | 0 | 18 |
A44316 | cagctcctcggtcacatccag | A44316 | A44316 Sequence 2 from Patent WO9511664. [Human adenovirus 5 | 28285.7] | 0 | 21 |
A44318 | tcgtacctcagcaccttccagatc | A44318 | A44318 Sequence 4 from Patent WO9511664. [Human adenovirus 5 | 28285.8] | 0 | 24 |
A51827 | gccgaattcttaattaacatcatcaataatatacctta | A51827 | A51827 Sequence 1 from Patent WO9617070. [unidentified adenovirus | 10535.34] | 0 | 38 |
A51828 | gacagatctgtcgacgtggcaggtaagatcgatca | A51828 | A51828 Sequence 2 from Patent WO9617070. [unidentified adenovirus | 10535.35] | 0 | 35 |
A51829 | aggagatctgtcgactctcaaacatgtctgcgggt | A51829 | A51829 Sequence 3 from Patent WO9617070. [unidentified adenovirus | 10535.36] | 0 | 35 |
A51832 | atcggaattcaagatgattaggtac | A51832 | A51832 Sequence 6 from Patent WO9617070. [unidentified adenovirus | 10535.37] | 0 | 25 |
A51833 | atcgtctagattaaggcattttcttttc | A51833 | A51833 Sequence 7 from Patent WO9617070. [unidentified adenovirus | 10535.39] | 0 | 28 |
A51834 | cagggatccgcggccgcatcatcaataatatacagg | A51834 | A51834 Sequence 8 from Patent WO9617070. [unidentified adenovirus CAV-2 | 10535.38] | 0 | 36 |
A51835 | ctgctgcagtcagaaatgctagcaggaga | A51835 | A51835 Sequence 9 from Patent WO9617070. [unidentified adenovirus CAV-2 | 10535.40] | 0 | 29 |
A51836 | tgcggatccacagactaagcggaggta | A51836 | A51836 Sequence 10 from Patent WO9617070. [unidentified adenovirus CAV-2 | 10535.41] | 0 | 27 |
A84817 | tagcactccattttcgtcggatccttgaactgttccagatat | A84817 | A84817 Sequence 12 from Patent WO9844121. [Human adenovirus 5 | 28285.9] | 0 | 42 |
A84818 | cttataataagatgagcactggatccagccaaaactgaaactg | A84818 | A84818 Sequence 13 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.10] | 0 | 43 |
A84819 | gtagcactccattttcgtcggatccaacagccaaaactgaaactg | A84819 | A84819 Sequence 14 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.11] | 0 | 45 |
A84820 | cgtcaaatcttataataagatgagcactcacgtttttgtttttaaacagggtgttgtagtcgctaacagccaaaactgaaactgtagc | A84820 | A84820 Sequence 15 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS HUMAIN AD5 ET AD3 | 28285.12] | 0 | 88 |
A84821 | gtagcactccattttcgtcaaagtagagctccacgttgatactttgaactgttccagatattgg | A84821 | A84821 Sequence 16 from Patent WO9844121. [Human adenovirus B3 ADENOVIRUS 3 | 45659.6] | 0 | 64 |
A84822 | cgtcaaagtagagctccacgttgatactcacgtttttgtttttaaacagggtgttgtagtcgctaacagccaaaactgaaactgtagc | A84822 | A84822 Sequence 17 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS AD5 ET AD3 | 28285.13] | 0 | 88 |
A84823 | ttgaactgttccagatattggggtcagtttgtctttaacagccaaaactgaaactg | A84823 | A84823 Sequence 18 from Patent WO9844121. [Human adenovirus 5 | 28285.14] | 0 | 56 |
A84824 | aataagatgagcactttgggtcagtttgtctattggagccaaactgcc | A84824 | A84824 Sequence 19 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.15] | 0 | 48 |
A84825 | ccagatattggagccaaactgtctttaacagccaaaactgaaac | A84825 | A84825 Sequence 20 from Patent WO9844121. [Human adenovirus 5 | 28285.16] | 0 | 44 |
A84826 | tgttccagatattggagcgaaactgcctttaacagccaaaac | A84826 | A84826 Sequence 21 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.17] | 0 | 42 |
A84827 | atgagcactttgaactgtgttagatattggagccaaactgcc | A84827 | A84827 Sequence 22 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.18] | 0 | 42 |
A84828 | taagatgagcactttgaacctttccagatattggagccaaactg | A84828 | A84828 Sequence 23 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.19] | 0 | 44 |
A84829 | cttataataagatgagcactttggtttgttccagatattggagcc | A84829 | A84829 Sequence 24 from Patent WO9844121. [Human adenovirus 5 ADENOVIRUS 5 (AD5) | 28285.20] | 0 | 45 |
A84830 | gtcaaatcttataataagatggaaactttgaactgttccagatattgg | A84830 | A84830 Sequence 25 from Patent WO9844121. [Human adenovirus 5 | 28285.21] | 0 | 48 |
A84831 | ccattttcgtcaaatcttataattttatgagcactttgaactgttcc | A84831 | A84831 Sequence 26 from Patent WO9844121. [Human adenovirus 5 | 28285.22] | 0 | 47 |
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Dataset Card for virus_dna_dataset
Dataset Summary
A collection of full virus genome dna, the dataset was built from NCBI data
Supported Tasks and Leaderboards
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Languages
DNA
Dataset Structure
Data Instances
{ 'Description' : 'NC_030848.1 Haloarcula californiae icosahedral...', 'dna_sequence' : 'TCATCTC TCTCTCT CTCTCTT GTTCCCG CGCCCGC CCGCCC...', 'sequence_length':'35787', 'organism_id':' AB063393.2'}
Data Fields
{ 'Description' : 'this contains the description about the DNA sequence contained in the NCBI dataset', 'dna_sequence' : 'this contains the dna sequence grouped by 7 nucleotides', 'sequence_length':'this contains the length of the dna sequence'}
Data Splits
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Dataset Creation
Curation Rationale
The goal of this dataset was to make it easier to train an LLM on virus DNA
Source Data
Initial Data Collection and Normalization
DNA sequences were grouped by 7 nucleotides to make it easier to tokenize. Only full genomes were selected
Who are the source language producers?
Viruses :)
Annotations
Annotation process
NCBI
Who are the annotators?
NCBI
Personal and Sensitive Information
N/A
Considerations for Using the Data
Social Impact of Dataset
Make it easier to train LLMs on virus DNA
Discussion of Biases
Only virus data that has been sequenced and upload into NCBI is contained in here
Other Known Limitations
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Additional Information
Dataset Curators
Hassan Ahmed
Licensing Information
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Citation Information
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