metadata

language:
  - en
bigbio_language:
  - English
license: other
multilinguality: monolingual
bigbio_license_shortname: GENIA_PROJECT_LICENSE
pretty_name: BioNLP 2013 PC
homepage: https://github.com/openbiocorpora/bionlp-st-2013-pc
bigbio_pubmed: true
bigbio_public: true
bigbio_tasks:
  - EVENT_EXTRACTION
  - NAMED_ENTITY_RECOGNITION
  - COREFERENCE_RESOLUTION

Dataset Card for BioNLP 2013 PC

Dataset Description

Homepage: https://github.com/openbiocorpora/bionlp-st-2013-pc
Pubmed: True
Public: True
Tasks: EE,NER,COREF

the Pathway Curation (PC) task is a main event extraction task of the BioNLP shared task (ST) 2013. The PC task concerns the automatic extraction of biomolecular reactions from text. The task setting, representation and semantics are defined with respect to pathway model standards and ontologies (SBML, BioPAX, SBO) and documents selected by relevance to specific model reactions. Two BioNLP ST 2013 participants successfully completed the PC task. The highest achieved F-score, 52.8%, indicates that event extraction is a promising approach to supporting pathway curation efforts.

Citation Information

@inproceedings{ohta-etal-2013-overview,
    title = "Overview of the Pathway Curation ({PC}) task of {B}io{NLP} Shared Task 2013",
    author = "Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Rak, Rafal  and
      Rowley, Andrew  and
      Chun, Hong-Woo  and
      Jung, Sung-Jae  and
      Choi, Sung-Pil  and
      Ananiadou, Sophia  and
      Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://aclanthology.org/W13-2009",
    pages = "67--75",
}