Dataset Card for Dataset GeneLab_BPS_BenchmarkData

Dataset Details

This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/

Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.

Further Documentation

https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub

Update Frequency

New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available.

Dataset Structure

GeneLab_BPS_BenchmarkData/
├── README.md
└── data/
├── High_Energy_Ion_Fe_Nuclei/
│ └── .tif
│ └── ...
└── XRay_irradiated_Nucleiation/
└── .tif
└── ...

How to Cite

Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData

Publications

• Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes
• NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative

Dataset Card Authors [optional]

Lauren Sanders (lauren.m.sanders@nasa.gov)

Dataset Card Contact

Frank Soboczenski (Frank.Soboczenski@york.ac.uk)