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--- |
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license: mit |
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tags: |
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- biology |
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--- |
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[[FFN paper]](https://www.nature.com/articles/s41592-018-0049-4), [[data from the paper]](https://storage.googleapis.com/j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/README.txt) |
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We downloaded and processed the data into formats that are easier to share. |
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- Ground truth |
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- train: `j0126-train-34vol.zip`, 34 densely labeled subvolumes |
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- validaiton: `valid_12_skeletons.h5`, manually traced skeletons for 12 neurons |
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- test: `test_50_skeletons.h5`, manually traced skeletons for 50 neurons |
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- FFN result (due to the file size constraint, we split the zip into two files) |
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``` |
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# first, merge the two parts together |
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zip -s 0 ffn_seg_part.zip --out ffn_seg.zip |
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rm ffn_seg_part* |
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# then, unzip the segmentation in tiles of the size 128x2048x2048 (saved in h5) |
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unzip ffn_seg.zip |
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``` |
