short-pubmed-bertopic

This is a BERTopic model. BERTopic is a flexible and modular topic modeling framework that allows for the generation of easily interpretable topics from large datasets.

Usage

To use this model, please install BERTopic:

pip install -U bertopic

You can use the model as follows:

from bertopic import BERTopic
topic_model = BERTopic.load("etanios/short-pubmed-bertopic")

topic_model.get_topic_info()

Topic overview

• Number of topics: 32
• Number of training documents: 9999

Click here for an overview of all topics.

Topic ID	Topic Keywords	Topic Frequency	Label
-1	patients - activity - cells - acid - 10	53	Medical research studies
0	health - children - care - medical - patient	3897	Healthcare and Mental Health
1	renal - pressure - renin - blood - sodium	702	Renal physiology and hypertension
2	progesterone - pregnancy - lh - testosterone - fetal	516	Reproductive physiology and endocrinology
3	ventricular - coronary - left - patients - myocardial	404	Cardiac physiology and anatomy
4	method - gas - liquid - chromatography - urine	381	Analytical techniques for chemical analysis
5	morphine - mg kg - kg - brain - mg	296	Effects of drugs on rat behavior
6	cells - tumor - mice - cell - lymphocytes	281	Tumor immunology and lymphocyte activation
7	hip - patients - joint - rheumatoid - knee	278	Hip and Knee Fractures in Rheumatoid Arthritis Patients
8	cells - electron - cell - axons - synaptic	265	Neuroanatomy and Synaptic Structures
9	retinal - eyes - vitreous - eye - cases	237	Ocular Surgery
10	patients - ulcer - cases - disease - crohn	203	Gastrointestinal surgery and complications
11	strains - resistant - antibiotic - gentamicin - antibiotics	201	Antibiotic resistance in bacterial strains
12	enzyme - molecular - acid - activity - phosphate	201	Enzymology and Molecular Biology
13	iron - hemoglobin - hb - erythrocytes - deficiency	178	Iron Deficiency Anemia Research
14	infection - virus - infected - vaccinated - cattle	175	Virus infection and vaccination studies
15	platelet - platelets - aggregation - fibrinogen - coagulation	167	Platelet function and coagulation
16	cancer - carcinoma - patients - tumor - cases	158	Cancer treatment and survival rates
17	lung - volume - oxygen - flow - ventilation	152	Pulmonary Function and Exercise
18	calcium - thyroid - t3 - parathyroid - t4	151	Thyroid and Parathyroid Hormones
19	fatty - cholesterol - acid - liver - acids	144	Lipid metabolism in rats
20	diet - weight - egg - diets - fed	117	Poultry Nutrition and Physiology
21	stimulation - nerve - neurons - units - motor	111	Motor Neuron Discharge and Potentials
22	glucose - insulin - glucagon - levels - blood glucose	102	Insulin and glucose metabolism
23	hearing - ear - cochlear - auditory - noise	99	Hearing and Auditory Function
24	rna - dna - chromatin - proteins - polymerase	95
25	carotid - artery - intracranial - aneurysms - subdural	94	Carotid Artery Aneurysms and Intracranial Hemorrhage
26	bone - mineral - fluoride - enamel - mineralization	81	Bone and Mineral Metabolism
27	temperature - degrees - heat - temperatures - cold	75	Effects of Temperature on Human Physiology
28	bile - acid - biliary - cholesterol - bile acid	63	Biliary Lipid Metabolism
29	visual - light - receptive - sensitivity - dark	61	Visual processing and sensitivity
30	lung - pulmonary - chest - pleural - patients	61	Respiratory system diseases and disorders

Training hyperparameters

• calculate_probabilities: False
• language: None
• low_memory: False
• min_topic_size: 10
• n_gram_range: (1, 1)
• nr_topics: None
• seed_topic_list: None
• top_n_words: 10
• verbose: True

Framework versions

• Numpy: 1.23.5
• HDBSCAN: 0.8.33
• UMAP: 0.5.4
• Pandas: 1.5.3
• Scikit-Learn: 1.2.2
• Sentence-transformers: 2.2.2
• Transformers: 4.33.2
• Numba: 0.56.4
• Plotly: 5.15.0
• Python: 3.10.12