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Model,RMSDens N=10,RMSDens N=100,RMSDens N=500,RMSDens N=1000,RMSD Cluster 3 N=10,RMSD Cluster 3 N=100,RMSD Cluster 3 N=500,RMSD Cluster 3 N=1000,Pairwise RMSD,CA clash (%),CA break (%),PepBond break (%)
EigenFold,1.56,1.50,1.47,1.46,2.54,2.48,2.46,2.46,0.85,1.4,4.3,-
MSA-depth256,1.57,1.54,1.52,1.52,2.51,2.47,2.45,2.45,0.20,0.0,0.0,9.2
MSA-depth64,1.60,1.54,1.51,1.50,2.48,2.40,2.35,2.33,0.55,0.0,0.0,7.9
MSA-depth32,1.67,1.53,1.45,1.41,2.39,2.21,1.93,1.87,2.14,0.6,0.0,10.6
Str2Str-ODE (Tmax=0.15),2.36,2.19,2.10,2.08,3.03,2.68,2.60,2.56,1.86,0.0,0.0,13.9
Str2Str-SDE (Tmax=0.15),2.83,2.48,2.28,2.25,3.42,2.92,2.52,2.48,3.60,0.3,0.0,16.0
AlphaFlow-PDB,1.53,1.45,1.42,1.41,2.48,2.43,2.41,2.40,0.86,0.0,0.0,13.2
AlphaFlow-MD,1.74,1.51,1.45,1.43,2.44,2.32,2.28,2.24,1.26,0.0,0.1,26.2
ESMFlow-PDB,1.61,1.49,1.44,1.42,2.47,2.41,2.37,2.35,0.74,0.0,0.0,6.0
ESMFlow-MD,1.66,1.50,1.41,1.40,2.49,2.29,2.20,2.18,1.17,0.0,0.0,14.3
ConfDiff-Open-ClsFree,1.65,1.48,1.41,1.37,2.56,2.30,2.16,2.03,1.77,0.5,0.0,5.5
ConfDiff-Open-MD,1.64,1.50,1.44,1.42,2.49,2.39,2.32,2.31,1.37,0.2,0.0,4.6
ConfDiff-ESM-ClsFree,1.58,1.45,1.41,1.39,2.50,2.39,2.35,2.33,1.52,0.5,0.0,7.5
ConfDiff-ESM-MD,1.61,1.47,1.42,1.40,2.45,2.32,2.26,2.24,1.42,0.1,0.0,5.0
ConfDiff-ESM-Energy,1.63,1.47,1.43,1.42,2.55,2.43,2.41,2.40,1.26,0.1,0.0,7.5
ConfDiff-ESM-Force,1.58,1.44,1.37,1.36,2.45,2.33,2.23,2.22,1.76,0.1,0.0,8.9 |